Perognathus longimembris pacificus (Pacific pocket mouse): 125350217
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Entry
125350217 CDS
T08928
Symbol
Trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125350217 (Trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125350217 (Trip12)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125350217 (Trip12)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
HECT type E3
125350217 (Trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
125350217
NCBI-ProteinID:
XP_048200516
LinkDB
All DBs
Position
4:7000387..7133360
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AA seq
2084 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKGYSPPESRKSNSKAPKVQ
SNTTSELSRGHLSKRSCSSSSAVIVPQPEDPDRANTSGRQKTGQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPKALQHIESPSQTNKPHSKSKKRHLDQEQQLKSAQSPSTSKAHTRKS
GAAGSSRSQKRKRTESSCLKSGSGFESTGAEERSAKPTKLASKSAASAKAGCSTITDSSS
AASTSSSSSAVASASSTIPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASTSCCGSHFQNVPYLCRRGSGLGKRGAAEARRQEKMADPESNQET
VNSSAARTDEAPQGAAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPL
GPRMSQLFHRTIGSGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVK
SVVPALITLLQMEHNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVA
EQALTALEMLSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHF
VADSLPLLTQRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVT
PPILSSGMFIMVVRMFSLMCSNCPTLAVQLMKQSFTDIAETLHFLLCGASNGSCQEQIDL
VPRSPQELYELTSLICELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYN
RIDSRIIEVAAHQVGEDEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNT
SGYSELKKDDARAQLMKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYF
ADAELLKDVLKNHAVSSHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMH
QVKHLAESESLLTSPPKACTNGSGSLGSTTSVSSGTATAATNAAADLGSPSLQHSRDDSL
DLSPQGRLSDVLKRKRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPK
TWGRLSAQSNSNNIEPARTAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSE
NMDGSNPALNVLQRLCAATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLL
LYLTSKSEKDAVSREIRLKRFLHVFFSSPLPGEEPIGRVEPVGHAPLLALVHKMNNCLSQ
MEQFPVKVHDFPSGNGTGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVK
IDPLALVQAIERYLVVRGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYI
GEHLLPYNMTVYQAVRQFSVQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEESN
KDCVGGKRGRAQTAPTKTSPRNAKKHDELWHDGVCPSVSNPLEVYLIPTPPENITFEDPS
LDVILLLRVLHAVSRYWYYLYDNAMCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIP
TWLTELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDR
KKRTVNREELLKQAESVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLG
LWRGEEVTLSNPKGSQEGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAI
MDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQ
TKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFW
ALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHG
YTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTEN
PDDFLPSVMTCVNYLKLPDYSSIEIMRDKLLIAAREGQQSFHLS
NT seq
6255 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccaaccacaagacgactcaataggaggaaggtcacatttagggcaggcaaaa
cataagggatatagccctcctgagagtagaaaatctaattctaaggcacccaaagtgcag
tctaatactacttctgaactgtcaaggggacacctttctaaaagaagctgcagttcatca
tctgctgtcatagttccacaaccagaggatccagacagagccaatacttcaggaaggcaa
aaaacggggcaggtgcctaagaaagacaattctcgaggagtgaaacgcagtgctagtcca
gactacaacaggaccaactctcctagctctgcgaaaaaacccaaagcacttcagcatatt
gagtctccctcacaaacaaataagccacatagtaagtcaaagaagagacatttagaccag
gagcaacaactgaaatctgcacaatcaccatcaacaagcaaggctcacaccagaaagagt
ggggccgctggtagttcacggagtcagaaaagaaagaggacagagagttcttgtctaaag
agtggttctgggtttgaatcaactggtgccgaagagagatctgcaaaacctaccaagctg
gcttcaaaatccgccgcctcagccaaagctgggtgtagcaccatcactgattcttcctct
gctgcctcgacttcctcatcatcttcggctgtagcctcagcatcttccaccatacctcca
ggtgccagggtgaagcaaggaaaagaccagaacaaggccagacgttcccgttcagcatcc
agtcctagtcccagaagaagtagcagggaaaaggaacagagtaaaactggtggctcttca
aaatttgattgggctgctcgtttcagccctaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggccaag
ttagcaagtttaagaaaatctaccaagaagcgcagtgagtccccacctgctgagctcccc
agtttgaggaggagcacacgccaaaagaccacgggctcctgtgctagtaccagttgctgt
ggatctcattttcagaatgtcccctacctttgtcggcgaggctctggcctgggcaagaga
ggagcagctgaggctcgtcggcaggagaaaatggcagaccctgaaagcaaccaggagaca
gtgaattcttcagctgccagaacagatgaagctccccaaggagctgcagcctctagttct
gttgcaggggctgttggcatgactacctctggggagagtgaatcggatgattctgagatg
ggacgattacaagctctgttagaggccaggggtcttcctcctcacctgtttggtcctctt
ggccctcggatgtcacaacttttccatagaacaattggaagcggagctagttcgaaggcc
cagcagcttctgcaaggactacaagccagtgatgagagtcagcagcttcaggcagtcatt
gaaatgtgtcagctattagtcatgggaaatgaggagacgctgggaggttttccagtcaag
agtgttgttccagctttgataacattactgcaaatggaacataattttgatattatgaat
catgcttgccgagccttaacatacatgatggaagcacttcctcgatcatctgctgttgta
gtagatgctattccagtctttttagaaaagctgcaagttattcagtgcattgatgtggca
gagcaggccttgactgccttggagatgttgtcacggagacacagtaaagctattctacag
gcgggtggtttggcagactgcttactatatctcgaattcttcagcataaatgcccaaaga
aatgcattagcaattgcagctaattgttgccagagtatcacaccagatgaatttcatttt
gtggcagattctcttccattgcttactcaaaggttaactcatcaggacaaaaagtcagtt
gaaagcacttgcctttgttttgcacgtctagtagacaactttcaacatgaagagaactta
ctacaacaggttgcctccaaagatctgcttacgaatgttcaacaattgttagtagtgact
ccaccgatcttaagttctgggatgtttataatggttgttcggatgttttctctgatgtgt
tccaactgtccaacactagctgttcaactgatgaagcaaagctttacagacattgcagaa
acacttcacttcctcctatgtggtgcctccaatggaagttgtcaggaacagattgatctt
gttcctagaagccctcaagagctatatgaattgacatctttgatttgtgaacttatgcca
tgcttaccaaaagaaggcatttttgcggttgataccatgttgaagaaaggaaatgcacaa
aacacagatggtgcaatatggcagtggcgtgatgatcggggcctctggcatccttacaac
aggattgacagccggatcattgaggtagcagcccatcaggtcggtgaggatgagataagc
ttgtccactctgggacgagtttatactattgattttaattctatgcagcaaatcaatgag
gacacagggacagcacgtgccattcaaagaaaacctaaccccttagccaataccaacact
agtggatattcagagttaaagaaggatgatgctcgagcacagcttatgaaagaagatccg
gaactggctaagtcttttattaagacattgtttggtgttctttatgaagtatatagttcc
tcagcaggacctgcggtcagacataagtgccttagagcaattcttaggataatttatttt
gcggatgctgagcttctgaaggatgttctgaaaaatcatgctgtttcaagtcacattgca
tccatgctatcaagccaagacctgaagatagtagttggagcacttcagatggcagaaatc
ttaatgcagaagttacctgatatttttagtgtttacttcagaagagaaggtgtaatgcat
caagttaaacatttagcagagtcagagtctttgttgacaagtccaccaaaggcatgtaca
aatgggtcaggatccttggggtctaccacgtcagttagcagtgggacagcaacggccgcc
accaatgctgcagctgatctgggatcacctagcttgcagcacagcagagatgattctctg
gacctgagccctcaaggtcgattaagtgatgttctgaagagaaaacgactgccaaaacga
gggccacgaaggccaaagtactcacctccaagagatgatgacaaagtagacaatcaagct
aaaagccccaccaccactcagtcacctaaatcttccttcctggccagcttgaatccaaaa
acatggggaaggttaagtgcacagtccaatagcaacaacattgagccagcacgaactgca
ggagttagtggtcttgccagggctgcctcaaaggataccatatccaataacagagaaaaa
attaaaggttggattaaggagcaggcacataaatttgtagagcgctattttagttctgag
aatatggatggaagcaatcctgcattgaatgtccttcagagactttgtgctgcaactgaa
caactcaacctccaggtggatggtggagctgagtgccttgtagaaatccgtagcatagtc
tcagaatcagatgtttcatcatttgaaatccagcatagtggatttgtgaagcagctgttg
ctgtatttgacatctaaaagtgaaaaggatgctgtaagcagagagatcagattaaagcga
tttcttcatgtatttttttcttctcctcttcccggagaagagcccattggacgagtagaa
ccagtgggtcatgcacctttgttggcattagttcacaagatgaacaactgcctcagccag
atggaacagtttccagtcaaagtgcatgatttccctagtggaaatgggacaggaggaagc
ttttctctcaacagaggatcacaggctttaaagtttttcaacacacatcagttaaaatgc
caattacaaagacatcctgattgtgcaaatgtgaagcagtggaagggtgggcctgtcaag
atcgaccccttggctttggtgcaagctatcgagagataccttgtagttagagggtatgga
agagtaagagaagatgatgaagacagtgatgatgatggatcagatgaggaaatagatgaa
tctctggctgctcagtttttaaattcaggaaatgtgagacacaggctacagttttacatt
ggagaacatttgctaccatacaatatgactgtgtatcaggcagtacgacagttcagtgtt
caggctgaagatgaaagagaatccacagatgatgagagcaatcccctaggaagagctggg
atttggacaaagactcatacaatatggtacaaacccgtgagagaggatgaagaaagtaat
aaagactgtgttggtggtaaaagaggaagagctcaaacagctccaacaaaaacgtccccc
agaaatgcaaaaaagcatgatgagttatggcatgatggagtatgcccatcagtgtcaaat
cctttagaagtttaccttattcccacaccacctgaaaatatcacctttgaagacccatca
ttagatgtgatcctccttttacgagttttacatgctgtcagtcgatactggtattacttg
tatgataatgcaatgtgcaaggagattattccaactagtgaatttattaacagtaagttg
acagcaaaagcgaacaggcagcttcaagatcctttagtaatcatgacaggaaacatccca
acatggcttactgagctaggaaaaacctgcccatttttctttccttttgatacccggcaa
atgcttttttatgtaaccgcatttgatcgagatcgggcaatgcaaagattacttgatacc
aacccagaaatcaaccagtctgattctcaagatagcagagttgcacctagattggataga
aaaaaacgtactgtgaacagagaggagttgttgaagcaagccgaatctgtgatgcaggac
cttggcagttcacgagccatgttagaaatccagtacgaaaatgaggttggtacaggtctt
gggcctacactggagttttatgcacttgtatctcaggaactacagagagctgacttgggt
ctctggagaggtgaagaagtaactcttagcaatccaaaaggaagccaagaagggaccaag
tatattcaaaacctccagggcctgtttgcgcttccttttggtaggacagctaagccagct
catatcgcaaaggttaagatgaagtttcgcttcttaggaaaattaatggctaaggctatc
atggatttcagattggtggaccttccccttggcttacccttttataagtggatgctacgg
caagaaacttcactgacatcacatgatttatttgacatcgaccctgttgtagccagatca
gtatatcacctggaagacattgtcaggcagaagaaaagactggaacaagataaatcccag
accaaagagagtctacagtatgcattggaaacacttactatgaatggctgctcagttgaa
gatctaggattggatttcacgctgccaggctttcccaacattgaactgaagaaaggaggg
aaagatattccagtcactatccacaatttagaggaatacctaagactggttatattctgg
gcactcaatgaaggtgtttctaggcagtttgattcatttcgagatggatttgaatctgtt
ttcccactcagtcatcttcagtacttttacccagaggaactggatcagctcctgtgtggc
agtaaagcagacacttgggatgcgaagacgttgatggagtgttgcaggcctgatcatggc
tacactcatgacagtcgggcggtgaagttcttgtttgagattctcagtagttttgataat
gagcagcagaggttgtttctccagtttgtgactggtagcccacgactgcctgttggagga
tttcggagtctgaacccacctttgactattgtccggaagacatttgaatcaacagagaac
ccagatgatttcttaccttctgtaatgacttgtgtgaactatcttaagttgccggactac
tcaagcattgaaataatgcgtgacaaactgttgatagcagcgagagaagggcagcagtca
ttccatctttcctga
DBGET
integrated database retrieval system
