KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125350237
Entry
125350237         CDS       T08928                                 
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151  PI3K-Akt signaling pathway
plop04382  Cornified envelope formation
plop04510  Focal adhesion
plop04512  ECM-receptor interaction
plop04518  Integrin signaling
plop04820  Cytoskeleton in muscle cells
plop04926  Relaxin signaling pathway
plop04933  AGE-RAGE signaling pathway in diabetic complications
plop04974  Protein digestion and absorption
plop05146  Amoebiasis
plop05165  Human papillomavirus infection
plop05200  Pathways in cancer
plop05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:plop00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    125350237 (Col4a4)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125350237 (Col4a4)
   04518 Integrin signaling
    125350237 (Col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125350237 (Col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125350237 (Col4a4)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    125350237 (Col4a4)
  09154 Digestive system
   04974 Protein digestion and absorption
    125350237 (Col4a4)
  09158 Development and regeneration
   04382 Cornified envelope formation
    125350237 (Col4a4)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125350237 (Col4a4)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    125350237 (Col4a4)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    125350237 (Col4a4)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    125350237 (Col4a4)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    125350237 (Col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:plop04147]
    125350237 (Col4a4)
   00536 Glycosaminoglycan binding proteins [BR:plop00536]
    125350237 (Col4a4)
Exosome [BR:plop04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125350237 (Col4a4)
Glycosaminoglycan binding proteins [BR:plop00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125350237 (Col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125350237
NCBI-ProteinID: XP_048200575
LinkDB
Position
4:8871409..8991417
AA seq 1680 aa
MRLFLRWTELLLTDSWSLVLILFFVQHTCGSGKKYVGPCGGRDCSVCLCFPEKGTRGPPG
PLGPQGPIGPLGPPGPTGIPGEKGLRGDAGPPGVVGEKGDKGPTGIPGFPGLGGIPGHPG
PPGSRGKPGLNGYNGSRGDPGFPGERGAPGPGGPPGLPGERGEKGNSVFIDGASKGIQGD
PGDPGPPGLPGPRGAPGPVGPRGYPGAAGLTGPPGHPGSAGLKGNPGVGVKGQMGDPGEV
GQQGFPGPTLLIEPPDSSLFKGEKGIKGLPGMIGSPGPPGPKGESGFGIKGEKGLPGFPG
PRGVPGSHGSPGFPGLKGEQGQAGEPGLFGFRGPKGDPGERGLPGPPGILVTPPVPLKGP
MGDPGCPGPQGEMGAIGSPGPPGAPGIPGIACPGTMGPPGPLGLPGPPGLPGAAGVPGRP
DSAPGKPGQPGPPGLPGAPGLPGPPGSDVPHCSLGYPGPPGMKGTMGPPGRRGSKGEKGN
QGLCSCKPGPMGPRGPPGPHGKQGSKGDPGLPGWLGEKGDPGPLGAEGSPGPPGKPGASG
PPGQKGTKGDMVVARFKGIKGERGPDGPPGFPGQPGQHGQDGRGGETGDPGPPGGHEDAI
PGAKGLPGPPGPPGKPGPIGPPGLGYPGPPGERGKPGLPGHPGARGPDGAKGQKGDSILC
NVTYFGKPGPPGFDGPPGLKGFPGAPGAPGRRCLDGQKGQRGKPGASETPGPPGLRGDMG
DPGFGGEKGFSPAGPPGPPGPRGVDGQKGIPGDSAFGHPGPPGNRGLPGVPGVKGARGHS
GRPGAEGAAGIPGSPGLQGPKGREGSAGFPGIPGPPGHSCRKGASGIPGQPGLPGAPGSP
GAPGWKGQRGPSGSAGMKGFPGPPGLPGADGFPGPPGIPGPFGEDGLPGLPGPKGPQGLP
GFPGFPGERGLPGPEGQPGRKGETGQKGWPGFGGDQGVRGAKGARGPPGAAGEMAIISKK
GMAGEPGPPGDNGFPGARGDKGNAGLPGRRGEPGPPGAPGLQRGEPGRNGEPGFPGPPGP
PGFPGLRGIIGFPGFPGDQGEPGFPGPPGFTGIDGGRGPKGIKGDPASPYGLPGPKGEPG
SPGCPGYAGAPGERGRPGDQGLRGPPGRPGPPGSLGPPGCPGEQGLPGLQGHPGEMGDPG
PRGLPGDPGTPGPPGVKGPSGSPGLNGLHGLKGEKGNKGASGLHEMGPPGPVGLPGLKGE
TGDPGRPGISPPGLFGEKGLPGPPGPPGPPGPAGAPGRAPEGDIPQQGPPGDRGPPGPDG
PRGEPGCPGPPGSVDLLKGEPGDHGLPGPPGLPGPPGPPGCQGIPGCDGKVGQKGPVGFP
GPPGPPGFPGPPGEKGLPGPPGRKGPVGPPGSRGEPGPPADADACPRIPGLPGVPGPRGP
EGPVGLPGQRGPPGQGCKGKPGLDGKRGQDGVPGPPGPPGHKGDPGETGYPGAPGPPGLI
GDPGPKGIGPGYLSGFLLVLHSQTDQEPACPVGMPRLWTGYSLLYMEGQEKAHNQDLGLA
GSCLPMFSTLPFAYCNIHQVCHYARRNDRSYWLASAAPLPMMPVSEEEIRPYISRCAVCE
APAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRAAP
FLECQGRQGTCHFFANEYSFWLTTVNPETQFTLAPSPDTLKEGQAQRQKISRCQVCVKYS
NT seq 5043 nt   +upstreamnt  +downstreamnt
atgaggctgtttctgagatggaccgagctcttgctcacagattcatggtcactcgtactt
attctgttttttgtgcaacacacatgtgggagtggcaagaaatatgttggtccttgcgga
ggaagagattgctcagtttgcctgtgttttcctgagaaggggactaggggcccaccggga
ccactggggcctcagggtcccatagggcccctgggacccccagggcccactgggattcca
ggagaaaaaggactgaggggtgacgctggccctcctggagtggtgggggagaaaggagac
aagggtccaactggcattcccggatttccaggtttgggcggaatacctggccacccaggg
cctcctggatccagaggaaaacctggcttgaatggctacaatggatcaagaggtgatcca
ggatttccaggagaaaggggagcgccaggccctggaggcccccctggtcttcctggagaa
cgtggtgaaaaaggaaattcagtgttcattgatggtgccagtaaaggcattcagggagat
ccaggggacccaggaccacccggcttaccaggacctcgaggtgcaccaggaccagtgggg
cccaggggctaccccggtgcagccgggctcacgggacctccagggcatcctggcagcgca
gggttgaagggcaatcctggtgtgggcgtgaaaggacaaatgggagacccgggtgaagtt
ggccagcaaggttttcctgggcccactctattgatagaaccacctgactcttctctcttt
aaaggagaaaagggtataaaaggacttcctggaatgattggatcgccaggaccaccggga
cccaagggagaatctggttttgggataaaaggtgagaaaggtcttcctggattcccagga
cctcggggtgttcctggctcccacgggtcacctggtttcccaggattaaagggagaacaa
ggacaggctggagagcccgggctatttggatttcgtggcccaaagggggaccctggagaa
cgtggactcccaggaccaccaggcattttagtaactccgcccgttcctcttaaaggtcct
atgggggacccaggatgtccaggcccccaaggagaaatgggggccattggatcaccaggt
cctccaggcgccccaggcataccaggcatagcttgtccaggtacgatggggcctcccggg
ccactggggttgcctggtcccccaggccttccaggggcagccggtgttcctgggagacca
gattcagcccctggcaaaccagggcagccagggccacctggccttcccggagccccgggg
ctgcccggacctccaggatccgatgtaccccattgcagccttgggtaccctggaccacct
ggaatgaaaggcacaatgggtcccccaggaagaagaggctcaaaaggagagaaaggaaac
caaggactctgttcctgcaaacctggccccatgggcccccgggggcccccagggcctcat
gggaagcaagggagtaaaggagacccagggctccctggctggcttggagaaaaaggtgat
ccaggcccacttggtgcggaaggatctccagggcccccagggaaacctggtgcctcagga
ccccctggccaaaaaggaacaaagggtgacatggttgtcgcacgatttaaagggatcaaa
ggagaaagaggacctgatggacccccaggatttccagggcagccaggacaacacggtcaa
gatggacgtggtggagagacaggggatccgggacccccagggggtcacgaagatgcaatc
ccaggtgctaaagggcttcctggaccaccaggccctccagggaaaccaggacccataggg
cctccagggcttggataccctggtccaccgggagagagaggaaagccaggactgcccggc
cacccgggtgcaaggggccctgatggagccaaggggcagaaaggtgacagcattctttgt
aatgtgacttactttgggaagcctggtcctccaggttttgatggacctccaggtctgaag
ggatttcctggtgccccgggcgctcctgggaggaggtgtttggatggacagaaaggccag
cggggcaaaccaggagcgtcagaaactccaggcccacctggcttacgtggtgacatggga
gacccaggttttggaggggaaaagggattctcacctgctggacccccaggccctcctggg
ccacgtggagtagatggccagaaaggaatcccaggagactctgcatttggtcacccagga
ccccctggaaataggggtcttccaggagtgccaggggtgaagggagccagaggtcactca
ggacgtccgggggctgaaggagcagctggcattccgggatccccaggtctccaaggtccc
aagggcagagagggaagtgctggcttcccaggcatcccaggcccacctggccattcctgt
agaaaaggcgcttccggcatcccaggccagccagggcttcctggggctcctggtagtcca
ggtgccccaggttggaaaggtcagagagggccttctggatcggctggaatgaagggcttc
cctggccccccaggactgccaggagctgatggattcccaggacctccaggaatcccaggc
ccctttggggaagatgggttacctggtcttccgggcccaaaggggccccagggcctgcct
ggtttccctggttttcctggagaaagaggacttccgggcccagagggtcagcctggaaga
aagggagaaactggacagaagggctggcctggctttgggggagaccaaggagtaagaggc
gctaaaggagcaagaggacctcctggagccgcaggagaaatggccatcatttctaaaaag
gggatggctggggaacctgggcctcctggagataatggcttcccaggagcaagaggtgac
aaaggaaatgctgggcttccggggagaagaggagagcccgggccacctggagcacctggc
cttcagagaggggagcccgggagaaatggagaacctggatttccaggaccccctggccct
ccggggttccccgggctcagagggatcattggtttcccaggattcccaggtgatcagggt
gaacccggtttcccaggcccccctggattcacaggaattgatggaggaagaggacccaaa
ggaatcaaaggtgaccctgccagtccgtatggtctgcctggtccaaagggtgagcccgga
agccccggatgtccaggatatgctggagcccctggagagcgaggacgacctggagatcaa
gggctgagaggaccccctggaagaccaggaccacctggctccttgggaccaccagggtgt
ccaggtgaacaggggcttcctgggctgcagggccatccaggagaaatgggagaccctggg
ccaagaggcctcccaggggatccaggcacaccaggtcctccaggagtaaaaggtccctct
ggttctcctggcctgaatggcttacatggtttgaagggtgagaaaggaaacaaaggtgct
tcaggtttgcatgaaatgggcccccctggccccgtgggattacctgggctaaaaggggag
acaggagaccccgggaggccagggatttctcctccaggtctttttggtgaaaaaggtctc
ccaggtcccccaggaccaccggggccccctggtcctgcaggtgctccaggaagagctccg
gagggtgacattcctcaacaaggcccacctggagatcgaggaccccctggccctgatggt
ccaagaggagaacccgggtgtccgggcccccctgggagtgtggatcttctgaaaggggag
cctggtgaccatggtttaccaggccctccaggccttccaggccctccaggtcctcccgga
tgccagggtattccaggatgcgatggaaaagttggccagaaaggaccagtgggatttcca
ggacccccaggcccacctggctttcctggaccacctggagagaaaggtttacctggaccc
ccaggcaggaaagggcccgtgggtcctccaggatccagaggtgaacctggcccacctgca
gatgcggatgcctgtccccgaatcccagggctccctggggtgccaggcccaagaggacca
gaagggcctgtgggactcccaggacagagaggccccccaggacaaggatgcaaaggaaag
cctgggctggatggcaagaggggccaggatggtgtccctgggcctcctgggcctcctgga
cacaaaggtgaccctggagagactggctatcctggagcaccaggccctcctggtctgatt
ggcgatcctgggcccaaagggattggccctggatatctcagtggcttcctcctggttctc
catagtcagacagaccaagaacctgcctgccctgtgggcatgcctcggctctggactgga
tatagtctgttatacatggaagggcaggagaaagcccataatcaagaccttggtctggca
gggtcttgccttcccatgttcagcacactgcccttcgcctactgtaacatccaccaagtg
tgccactatgcacggagaaacgacaggtcctactggctggccagcgccgccccccttccc
atgatgccagtctccgaggaagagattcgcccgtacatcagccgctgcgctgtgtgcgag
gccccggcccaggcggtggcggtgcacagccaggatcagtccattcctccgtgtccgcgg
gcctggaggagcctctggatcgggtattctttcctgatgcacacaggcgctggggaccaa
ggaggaggccaggctctcatgtcccctggcagctgcctggaggatttcagagccgcgcca
ttcctggaatgccaaggccggcaagggacgtgccacttctttgcaaatgagtatagtttc
tggctgacgacggtgaacccagagacgcagtttactttggccccatcaccagacacctta
aaagaaggccaggcccagcgccagaaaatcagcaggtgccaagtgtgtgtgaagtacagc
tag

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