Perognathus longimembris pacificus (Pacific pocket mouse): 125350257
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Entry
125350257 CDS
T08928
Symbol
Farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
125350257 (Farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
plop01007
]
125350257 (Farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125350257 (Farsb)
Enzymes [BR:
plop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
125350257 (Farsb)
Amino acid related enzymes [BR:
plop01007
]
Aminoacyl-tRNA synthetase
Class II (U)
125350257 (Farsb)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
125350257 (Farsb)
Prokaryotic type
125350257 (Farsb)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
B5
B3_4
EAD7
Glyco_hydro_77
Motif
Other DBs
NCBI-GeneID:
125350257
NCBI-ProteinID:
XP_048200624
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All DBs
Position
4:12067667..12129398
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AA seq
589 aa
AA seq
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MPTVSVKRELLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAQGASDV
VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVLPDGEVQKLIVTEETGKVRPY
AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
IKFKPLNKTKEHTACELMNIYKTDNHLKHYLHILENKPLYPVIYDSKGVVLSMPPIINGD
HSKITVNTKNVFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAVEVAFPNGKSSTFP
ELAYRKEMVRADFINKKVGIRETPQNLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
ACDIVEDAAIAYGYNNIQMALPKTYTIANQFPLNKLTELLRVDVAAAGFTEALTFALCSQ
EDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
VVKDSSKDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRVMQLLNVPPGEDKGGYVIKASEG
PAFFPGRCAEVFARGCSVGKLGVLHPDVITRFELTMPCSSLEINIEPFL
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgtcagcgtgaagcgcgagctgctctttcaagccctgggccggacctacact
gatgaagaatttgatgaactatgttttgaatttggcctggagcttgatgaaattacttct
gagaaggaaataataagtaaggaacaaggtaatgtaaaggcacagggggcctctgatgtt
gttctttacaaaattgatgtccctgccaatagatatgatcttctatgcctagaagggttg
gttcgaggactacaggtcttcaaagaaaggataaaagctccagtatataaacgagtactg
ccagatggagaagtccaaaaattgattgtcacagaagagacaggtaaagtgaggccttat
gccgtagcagcagttctccggaatataaagtttactaaagatcgatatgacagcttcatt
gaacttcaggagaaattacatcagaatatttgcaggaaaagagcccttgttgccattggc
acccatgatttggatactttgtcaggcccctttacatacactgcaaagcgcccttcagat
atcaaattcaagcctctcaataagacaaaggagcatacagcctgtgaattaatgaacata
tacaagactgataatcaccttaaacattatttacatatccttgagaataaaccactgtac
ccagttatctatgacagtaaaggggttgtgctttctatgcctccaatcatcaatggggat
cattccaaaataaccgtaaatactaaaaatgtgtttatcgaatgcacaggaactgatttt
actaaggcaaaaatagttcttgatataattgtcaccatgttcagtgaatattgtgaaaat
caatttacggttgaagctgttgaggtagcttttcctaatggaaaatcaagtacctttcct
gaactggcttaccgaaaggagatggtgagagctgattttattaacaaaaaagttggaatc
agagaaactccacaaaatcttgccaaactcctgaccaggatgtacttaaagtcggaagtc
ataggtgatgggaatcagattgagattgaaattccgccgaccagagccgacattatccat
gcatgtgatattgtagaagatgcagctattgcttatggatataacaatattcagatggct
ctccccaaaacatacaccatagctaatcaatttccccttaataagctaacggaacttctc
cgggttgacgtggcagctgctggattcactgaagcacttacctttgctttgtgttctcaa
gaagatattgctgataaacttggtttggatatctctgcgacaaaggcagtccacataagc
aatcctaaaacagctgaatttcaggtggcacgaactaccctccttcctggtctcctgaag
accatagctgcgaataggaagatgccccttcctctgaaactctttgaaatttctgacatt
gtagtaaaagattctagcaaagatgttggtgcaaaaaactacaggcatctctgtgctgtt
tactacaacaagaatcctgggtttgagataatccatggactgctggacagggtcatgcag
ctgctcaatgtgccccctggtgaagacaagggcggctatgtgattaaagcatcagagggc
cccgcgttcttccctgggcgctgtgctgaggtctttgccaggggctgcagtgtggggaag
cttggggtccttcatcccgatgttattaccagattcgagctcaccatgccctgctcctcg
ctggaaatcaacatcgagccgttcttgtga
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