Perognathus longimembris pacificus (Pacific pocket mouse): 125350327
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Entry
125350327 CDS
T08928
Symbol
Xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125350327 (Xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125350327 (Xrcc5)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
125350327 (Xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_PK_bind
Ku_C
Phage_int_SAM_5
Motif
Other DBs
NCBI-GeneID:
125350327
NCBI-ProteinID:
XP_048200757
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Position
4:complement(17485772..17582154)
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AA seq
732 aa
AA seq
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MERMGSKAAVVLCMDVGFTMNNSFPGKDSPFEQAKKVMTMFIQRQVFSESKDEIALVLFG
TDGTENCLAGGDQYQNITVHRHLMLPDFDLLEDIENKIQPGSQQADFLDALIVCMDVLQR
ETVGKKFEKRHIEVFTDLSSPFSKDQVDIIIQNLKTSGISLQFFLPFPVGKKDGTGDRGD
GNFSLDHSEPSFPQKGITQQQKEGIHMVEKMMMSLEGEDGLDEIYSFSESLRQLNAFKKI
ERRSMPWPCQLTIGSSLSIRIVAYKSIIQTKARKTWIIVDARTLKKEDVRRETVYCLNDD
DETEVSKEDIIQGFRYGSDIVPFSKVDEEQMKYKTDGKCFSVLGFCRSSQVQRRFFMGNQ
VLKVFAAKGDEVAAVALSSLIHALDELDMVAIIRYAYGKKTNPQVGVAFPLIKEAYECLV
YVQLPFMEDLRQYMFSSLKNNKKCTPSEAQLSAVDELIDSMSLIKKDEEEDTIEDLFQTT
KIPNPEFQRLFQCLLHRALHPRDPLPPIQQHLWNMLDPPTEVTAKCQSSFSKIKTLFPLT
EAIKKKDQITAQDIFQDNHEEEPSAKKSKTEEGQINLSISSLAEGTVTKVGSVNPVGNFR
ALVRQKNVSFEEVSHQLINHIEQFLETNETPYFMKSMDCIRAFREDAIQFSEEQRFNTFL
KALREKVEIKQLSHFWEIVVQDGITLISKDEASGSSVTAEEAKQFLAPKEPNEDVLAAFE
EGGDVDDLLDMI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggagcggatggggagtaaggcagctgttgtgctgtgtatggatgtgggctttactatg
aataactcctttcctggtaaagattccccatttgaacaagcaaagaaggtgatgaccatg
tttatccagcggcaggtgttttctgagagcaaggatgagattgccttagtcctgtttggt
acagatggcactgagaattgccttgctggaggggaccagtatcaaaacatcacagtgcac
agacacctgatgttaccagattttgacttgctggaggacattgaaaacaaaatccaacca
ggctcccaacaagccgactttctggatgccctgattgtgtgcatggatgtgcttcaacgt
gaaactgtaggaaagaagttcgagaagaggcatattgaagtgttcactgacctgagcagt
ccattcagcaaagaccaagtagatattataattcaaaacttgaagacatctggcatctcc
ctgcaattctttttgcctttcccagttggcaagaaagatgggactggggacagaggagat
ggcaacttcagcttggaccactctgaaccatcctttcctcaaaaaggaattactcagcag
caaaaagaaggtattcacatggtagaaaaaatgatgatgtctttagaaggtgaggatgga
ctggatgaaatttattccttcagtgagagcctgcgacaactgaatgcctttaagaaaatt
gagaggcgttccatgccctggccctgccagctgaccattggctccagtttgtctatacgg
attgtggcctataaatcgattatacagacaaaagctagaaagacttggataattgtggat
gcaagaacccttaagaaagaagatgtacgaagagaaacagtttattgcttaaatgatgat
gatgaaacagaagtttccaaagaagatattattcaagggttccgctacggaagtgatata
gttcccttctctaaagtggatgaggaacaaatgaaatataaaacggatggaaagtgcttc
tctgttttgggattttgtagatcttctcaggtccagaggagattctttatgggaaatcag
gttctaaaggtttttgcagcaaaaggtgatgaggtggcagcagttgcgctttcctccttg
attcatgctttggatgaattagacatggtggccataattcgatatgcttatggcaaaaaa
actaaccctcaagttggcgtggcttttcctcttattaaagaagcatatgagtgtttagtg
tatgtgcagctgcctttcatggaagacttgcggcagtacatgttttcatcactgaaaaat
aataagaaatgtactccttcagaggcacagttgagtgctgttgacgagctgattgactct
atgagtttgattaagaaagatgaggaagaagataccattgaagacttgtttcaaactact
aaaatcccaaatcctgaatttcagaggttattccagtgtctgctgcacagggctttacat
ccccgggatcctctgcccccgattcagcagcatctttggaatatgctggaccctcccact
gaagtgacagcgaaatgtcagagttctttttctaaaataaagactcttttccctctcact
gaagccatcaagaaaaaggatcaaataactgcccaggacattttccaagacaatcatgaa
gaagagccatctgctaaaaaatccaaaactgaggaagggcaaatcaacttgagtatctcc
agcctggccgaaggcactgtcaccaaggttggaagtgtaaatcctgttgggaacttccgt
gctctagtaagacagaagaatgtcagctttgaggaagtgagccaccagctaataaaccac
attgaacagtttttggagacgaatgaaacaccatattttatgaagagcatggactgcatc
agagcttttcgagaagacgccattcagttttcagaagagcagcgcttcaacactttcctg
aaagcccttcgagagaaagtggaaattaaacaattaagtcatttctgggaaattgtggtc
caggatggaattacactgatctccaaagatgaagcctctggaagctctgtcacagctgaa
gaagccaaacagtttctggcccccaaagaaccaaatgaagatgtgttagctgcatttgaa
gaaggtggtgatgtggatgatttactggatatgatatag
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