Perognathus longimembris pacificus (Pacific pocket mouse): 125350440
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Entry
125350440 CDS
T08928
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125350440 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125350440 (Sf3b1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125350440 (Sf3b1)
Spliceosome [BR:
plop03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125350440 (Sf3b1)
Complex B
125350440 (Sf3b1)
Complex C
U2 SnRNP specific factors
125350440 (Sf3b1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125350440 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
125350440
NCBI-ProteinID:
XP_048200997
LinkDB
All DBs
Position
4:32259531..32304886
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagctcagattcgagaaattcaaggc
aaaaaggcagctcttgatgaagcgcaaggagtgggccttgattctacaggttattatgac
caggagatttatggtggaagtgacagccgatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactattcatcatctacaagtttgcttggtcagaag
aagcctggatatcatgcccctgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccgtttgctgagcaccgacccccaaagattgccgaccgcgaagatgaatataaa
aagcacagacggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagaccccagatcctaaaatgaatgctagaacttacatggatgtaatgcgagaacaacat
ttaactaaagaagagagagaaattaggcagcagctagcagaaaaagctaaagctggagaa
ttaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacggcgttgg
gatcaaacagccgatcagactcctggtgccactcctaaaaagctatcaagttgggatcag
gcagagacacctgggcataccccttccttaagatgggatgagacaccaggtcgtgcaaaa
ggaagtgagactcctggagcaaccccaggctcaaaaatttgggatcctactcctagtcat
acacctgcaggagctgctactcctggacgaggcgatacaccaggccatgcaacaccagga
catggaggcgcaacttccagtgctcgtaaaaacagatgggatgagactcccaaaacagag
agagatactcccggacatggaagtggatgggccgagactcctcgaacggatcgaggtgga
gattcaattggtgaaacaccgactcctggagccagcaaaagaaaatcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacacctggaaaaacaccaatt
ggcacaccagccatgaacatggctactcctactccaggtcacataatgagcatgactcct
gaacagcttcaagcctggagatgggagagagaaattgatgagcgaaatcgccctctctct
gatgaagagttggatgccatgtttccagaaggatataaggtacttccccctccagctggt
tatgttcctatacgaactccagctcggaagctgactgcaactccaacacctttaggtggt
atgactggtttccatatgcaaactgaagatagaaccatgaaaagtgttaatgaccagcca
tctggaaatcttccatttttaaaacctgacgacattcagtactttgacaaactactggtt
gatgtggatgaatcaacacttagtccagaagagcaaaaagaaagaaagataatgaagttg
ctgttaaaaattaagaatggaacacctccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctgggcctttgtttaatcagattcttcctctactgatg
tctcctacgcttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagtacgaccatatgtgcacaagattcttgtggtcattgaacca
ctgttgattgatgaagactactatgctagagtggaaggccgagagattatttctaacttg
gcaaaggcagctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagctagagcttttgctgttgtagcctctgccctgggc
attccttctttattgcccttcttaaaagctgtgtgcaaaagcaagaaatcttggcaagcg
agacacactggcattaagattgtacagcagatagctattcttatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtcttgtggatgagcaacagaaa
gttaggaccatcagtgctttggctattgctgccttggctgaagcagcaacaccttatggt
attgaatcttttgattctgtgctcaaacctctatggaagggtattcgtcaacacagagga
aagggtttagctgctttcttaaaggctattggatatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaattcttattcgagaattccaatctcct
gatgaagaaatgaagaaaattgtactgaaggtggtaaaacagtgttgtgggacagacggt
gtagaagcaaattacataaaaacagagattcttcctcctttctttaaacatttctggcag
cacagaatggctttggatagaagaaattaccgacagttggttgatactactgtggagttg
gcaaataaagtaggtgcagcagaaattatatctaggattgtagatgatctgaaagatgaa
gctgaacagtaccggaaaatggtgatggaaacaattgagaaaattatgggcaacttagga
gcagcagatattgatcataaacttgaagaacagctgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgctgaatggctttggcacagtggtcaatgct
cttggcaagcgagtaaaaccatacttgcctcagatatgtggtactgtattgtggcgtttg
aataacaaatcagcgaaagttaggcaacaggcggctgacttgatttctcgaactgctgtt
gtcatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgttgtatgaa
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggctatt
gtaaatgtcataggtatgcataagatgactccaccaattaaagatctgctgcctagactc
acccctatcttaaagaacagacatgaaaaagtacaagaaaattgtattgatcttgttgga
cgtattgctgataggggagctgaatatgtgtctgcaagagagtggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggttatattgcaaaggccattggccctcatgatgtattggctacgcttttaaacaac
cttaaagttcaggaaaggcaaaacagagtttgtaccactgtagcaatagctattgttgct
gaaacgtgttcacccttcacggtacttcctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtattaaaatcactctcattcttgtttgagtatattggtgaa
atgggaaaagattacatttatgctgtaacaccattactggaagatgctttaatggatagg
gaccttgtacacagacagacagcaagtgcagtggtacaacacatgtcacttggggtttat
gggtttggttgtgaagattctctgaatcacttgctgaactatgtatggcccaatgtgttt
gagacatctccccatgtaatccaggcagttatgggagccctggagggtctgagagttgct
attggaccatgtagaatgttgcagtattgtctacagggtctgtttcatccagctcggaaa
gtcagagatgtgtattggaaaatttacaactccatctatattggttcacaagatgctctc
atagcacactatccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
