Perognathus longimembris pacificus (Pacific pocket mouse): 125350468
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Entry
125350468 CDS
T08928
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125350468 (Pms1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125350468 (Pms1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
125350468
NCBI-ProteinID:
XP_048201046
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Position
4:complement(37856339..37933494)
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AA seq
953 aa
AA seq
DB search
MWLIQTPQSLVTKPGGRGQNRKAITLLKARMKQLPAATVRLLSSSQIITSVLSVVKELIE
NSLDAGATSIEVKLENYGFDKIEVRDNGEGIKAVDTPVMAVKYYTSKISSHEDLENLTTY
GFRGEALGSICCVAEVLITTRTAADNFSTQYVLDGSGHILSQKPSHLGQGTTVTALRLFK
NLPVRKQFYSTTKKCKDELKKIQDLLISYGIIKPDLRLVLVHNKAVIWQKSRVADHKMAL
MSVLGTAVMSNIESLEYYSEECQVYLSGFFPKHDADHSSTSLSTPERSFIYINSRPVHQK
DILKLVRRYYNLKCLKESTRLYPIFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALE
NLMVTFYGPVPSTDSHENNKTDVSSAETVEADVLFNKIETSVNNCPNGDISAVSSQKGVY
NDESQKTTDLCLSHQINISDHCDDHFNRENSNINKDTKNTVEKNLRDNLSSENIQRECIA
ACFEGSVKHMQLENSSKGHVDDSGKPKEASSSSETSLDICADDWSKGNLLNSVGENIEPV
KILVPQNSLACKVSNNDQGLEQKNLSDGACSKKSNVIDNKSGQLTAYDLISSRVIKKPMS
ASAIFIQDHRAQFLTENPKTSLEDATVQIEELWKTLTKEEKLKYEEKATKDLERYNTQMK
KAIEQESQMSLKDNRKKIKSTSTWSLAQKHKLKTSLSNQPKLDELFQSQNEKKRSENIKI
IEIPFSMENLKINFEKQKEFDVEEQDELCLIHNLRFPDAWLVASKTEIMLLNPYRVEEAL
LFKRLLENHELPAEPLDQPIILTESLFNGSHYLEILCKMASDDQRCGGWTYLSDARLTAN
GFKIKLIPGVSVTESYLEIEAMANCLPFYGVTDLKEILNAILNKNAKEIYECRPRKVIHY
LEGEAVRLSRQLPMYLPKEDIKNIIHRMKHQFANEIKGCVHGRPFFHHLTNLP
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgtggttaatacaaacaccccaatccttagtaactaagccaggaggaagaggacaaaat
agaaaagcaattactctactaaaagccagaatgaaacagttgcctgcagcaacagttcgc
ctcctttcaagttctcagataatcacgtcagtgctcagtgttgtgaaggagctcattgaa
aactccttggatgctggtgccacaagcatagaggttaagctggagaactatggatttgat
aagatagaggttcgagacaatggtgagggtatcaaggctgttgatacacctgtaatggca
gtgaagtactacacttcaaagataagcagtcatgaagatctggaaaacctgacaacatat
ggttttcgtggggaagccctaggttcaatttgttgtgtggcagaggttttaattacaaca
agaacagctgctgataattttagcactcagtatgttttagatggtagtggccacatactt
tctcaaaaaccttcacatcttggtcaaggtacaactgtcactgctttaaggttatttaag
aatctgcctgtaagaaagcaattttactcaaccactaaaaaatgtaaagatgagctaaaa
aagatccaggatctcctgataagctatggtatcataaaacccgatttaagacttgtttta
gtacataataaggcagttatttggcagaaaagtagagtagcagaccacaaaatggcccta
atgtcagttcttgggactgctgttatgagcaacattgaatccttggagtactactctgaa
gaatgtcaggtttatcttagcggattctttccaaagcatgatgccgaccacagttccaca
agtctttcaaccccagagagaagtttcatttatatcaatagtcgaccagtacatcaaaaa
gacatattaaagttggtccgacgttactacaatctgaaatgcctaaaggaatccactcgt
ttgtatccaattttctttctgaaaatagatgttcctacagctgatgtggatgtaaactta
acaccagataaaagtcaagtattattacagaataaggagtctgtcttaattgctcttgaa
aatctgatggtgactttttatggaccagtacctagtacagattctcatgaaaataataaa
acagatgtttcctcagctgaaacagtagaagcagatgtgctttttaataaaatagaaaca
tctgtaaataattgtccaaatggtgatatttcagctgtatcttcccaaaaaggtgtatat
aatgatgaatctcaaaaaaccaccgatctttgtttaagtcatcaaataaatattagtgac
cattgtgatgatcattttaatagggaaaattctaacatcaataaagacactaaaaataca
gttgaaaaaaacttaagggataatttatcctcggagaatatccaaagggaatgtattgca
gcttgttttgaaggttctgttaagcatatgcaattagaaaatagcagtaaaggccatgtg
gatgatagtgggaaacctaaagaagcatcatcatcttctgagacgtctttagacatttgt
gcagatgactggagcaagggaaatttacttaattcagttggagagaatattgaacctgtg
aaaattttagtgcctcaaaacagtttagcctgcaaagtgagtaataatgatcaaggcctt
gaacaaaagaatctcagtgatggtgcttgtagtaaaaaatcaaatgtaatagataacaag
tcaggacagcttacagcttatgacttaattagcagtcgagtgatcaagaaacccatgtca
gcaagtgccatttttattcaagaccatcgtgctcagtttctcacagaaaatcctaagacc
agtttggaggacgcaactgtacaaattgaagaactgtggaagacattgactaaagaggaa
aagttgaaatatgaagaaaaggctactaaagatttggaacgatacaatactcaaatgaag
aaagccattgaacaagagtcacaaatgtcattaaaggataacagaaaaaagataaaatcc
accagcacatggagtttggcacagaaacacaagctgaaaacttcattatctaatcagcca
aaacttgatgagctctttcagtcccaaaatgaaaaaaaacggagtgaaaatattaaaata
atagagattcctttttctatggaaaacttaaaaataaattttgagaaacaaaaggagttt
gatgtagaagagcaggatgaactttgcttaattcacaatcttaggtttcctgatgcatgg
ctagttgcatccaaaacagagataatgttgctcaatccatacagagtcgaggaggccctg
ctatttaaaagacttcttgagaatcatgaactacctgcagagccactggaccagccgatt
atactaacagaaagtcttttcaatggatctcattatttagagattttgtgtaaaatggca
tcagatgaccaaagatgtggtggatggacttacctgtctgatgctcgtcttacagcaaat
ggtttcaagataaagttgataccaggcgtttccgttaccgaaagctacttggaaatagaa
gcaatggctaattgtctcccattctatggagtaacagatttaaaagaaattctcaatgct
atactaaacaaaaatgcaaaggaaatttatgaatgtagacctcggaaagtgatacattat
ttagagggagaagcagtacgtctatctagacaactacctatgtatttaccaaaagaagac
atcaaaaatataatccatagaatgaagcatcagtttgcaaatgaaattaaagggtgtgtt
catggtcgtccattttttcatcatttaacaaaccttccataa
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