Perognathus longimembris pacificus (Pacific pocket mouse): 125351256
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Entry
125351256 CDS
T08928
Name
(RefSeq) LOW QUALITY PROTEIN: snRNA-activating protein complex subunit 4-like
KO
K09453
snRNA-activating protein complex subunit 4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125351256
03021 Transcription machinery [BR:
plop03021
]
125351256
Transcription factors [BR:
plop03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
125351256
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
125351256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
125351256
NCBI-ProteinID:
XP_048201920
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Position
1:161378039..161397090
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AA seq
1370 aa
AA seq
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MDIDAEREKITKEIKELERILDPSSSSIPLGVCESSLYSSDSEADSLPNEDSDTTGTPPL
EGERWGEASNEEEDPKDKTLPEDPETCLQLNMVYQEVIREKLAEVSQLLAQNREQQEEIL
WDLAGSKGPKVKEGRSLPPNMYIGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKAFEAL
LVTKWKHWEKALLRKSVVSDRLQRLLQPKLLKLEYLRQKQSRVSSEPETQALEKQVREAE
KEIQDINQLPEEALLGNRLDSHDWEKISNVNFEGGRSAEEIRKFWQSSEHPSINKQDWSG
EEVERLRAIAAKHGHLEWQLVAEELGTSRSAFQCLQKFQQHNPALKRREWTEEEDRMLTQ
LVQEMRVGGHVPYRRIVYYMEGRDSVQLIYRWTKSLDPNLKKGFWAPEEDAKLLQAVAKY
GEQDWFKIREEVPGRSDAQCRDRYLRRLHFSLKKGRWDAKEEEQLIELIEKYGVGHWAKI
ASELPHRSGSQCLSKWKIMVGRKRSLRRRRRRPRRRARWSSSSSSGGGSEDSADSSTSSS
SSSSSSSSSESSEAELEESQGRGGALLPPQYTVPDIDLWVPARPRASQPHREGAAAPAAA
VSEGSDAAPARPQDVPTAAPAGEPSSRVHGTILRGTQDPHPPDTRPASAEEPACKQERQR
QPALPASPPGPGPGDRMDASHLKRLWQQRRRHALRQRLLERKLLLAVTPWVGDNALPCTQ
ASRRAGAVQTHADGIRMKLEHARLASTPVFTLFIQLLQIDTAGCMEVVRERKARPLPARQ
PGAPAPLQEPSSVQSTPGRLLPAVPPQSTAQNTSHVGHAGLGSRRPEPAASPVPAPAPWG
PRPKPKTVSELLREKRLRESRARKAAQGPVVLQPQLLVSSPVVLQPPLPAAAQGPPATCL
TIANPALSGPGTPLVASASPSGSWQEAGASAKGERPASLPAGSLAPALPGAQGTAPAACS
PPAPGPSPGPVSGPPGNPGPPRAPAASQEQSLPRVLPLFPAVPSPAPPLSLPPQGGAPLP
ASLPLPVTWVLTAQXLLPVPVPAVIGVSRPAATPDPAGLPATLPPPPAETPSPSPASADT
EPATSSGTLPPAGPPSQGPATERDPRPAPGVAQVAREASVSRASAPAGHTGAEPPRPSPP
PAHSAPGCRREPGGTPGKASGSLELRGPPSPERPEKGALDLGLLSQESEAAARKWLRGPR
GARVPQLESRLPYQPPALCNLRVLASLLLQKKALERRAASLLTRGPARAGAEPEAGAVQA
SLGLVRRRLQDNPAYLLLKTRFLAALALPALLATLPPRGVPTTLSLATGVDLESDEDPGQ
LEGEDAAGSPAQGSPNPGKASAPSQPDASDDLDVLRTRRARHVRKRRRLL
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggacatagatgcagaaagagagaaaataacaaaggaaatcaaggagctggagaggatt
ttggatcccagttcttccagcatccccctgggagtctgtgaatcaagtctctattcctca
gactctgaagcagattcgctgcccaatgaagactcggacaccactggcactccacccttg
gaaggggaaaggtggggcgaggccagcaatgaggaggaggaccccaaggataaaaccctt
cccgaagaccctgagacctgtctgcagctcaatatggtctaccaggaggtcatccgtgag
aagctggcagaggtcagccagttgctggcccagaaccgagagcagcaggaagaaattcta
tgggatttggccgggtccaaaggccccaaggtgaaggaaggcaggagcctgccgcccaac
atgtacataggccacttcatgaagccatacttcaaggacaaagtcactggagtgggcccc
cctgccaatgaagacactcgcgagaaggccgcccaaggaatcaaggccttcgaggcgctc
ctggtgaccaagtggaagcactgggagaaagccctgctcaggaagtccgtggtgagtgac
cgtctgcagcgcctgctccagcccaagttgctaaagctcgagtacttacgccagaagcag
agccgtgtgtccagtgagccggagacacaggccctggagaagcaagtgagggaggcggag
aaggagatccaggatatcaaccagctcccggaagaagccttgctgggaaacaggctggac
agccacgactgggagaagatttccaacgtcaatttcgaaggaggccgcagtgcagaggag
atccggaagttctggcagagctctgagcacccgagcatcaacaagcaggactggagcggg
gaggaggtggagcggctgagggccatcgcggccaagcatggccacctggaatggcagctg
gtcgcagaggagctggggaccagccgcagcgccttccagtgcctgcagaagttccagcag
cacaacccagcgctgaaacgcagggagtggaccgaggaggaggaccgcatgctcacccag
ctggtccaggagatgcgcgttgggggccacgtcccgtaccgtagaattgtctactacatg
gaagggagagactccgtgcagctcatctaccgctggaccaagagcttggatcccaacctg
aagaaggggttctgggcccccgaggaagatgccaagctgcttcaagccgtcgccaagtat
ggggagcaggactggtttaaaatccgtgaagaggtgccaggcaggagcgacgcgcagtgc
cgggaccgctatctcagaagattacatttcagcttgaagaagggacgatgggatgcaaaa
gaagaggaacagttaattgaattaatagagaaatatggtgttggtcactgggcgaaaatt
gcttctgaactcccccatcgatcaggttcccagtgtctgagcaagtggaaaatcatggtt
gggaggaagcggagtctccgcaggcggcggcggaggccccgtcgcagggcccgctggagc
tccagcagcagcagtggcggcggcagtgaggacagcgctgacagcagcaccagcagcagc
agcagcagcagcagcagcagcagcagcgagagctcggaggcggagctggaagagtcccag
gggcggggcggggcgctgttgcccccacagtacacagtaccagacattgacctgtgggtt
cctgcaaggccacgtgccagccagccacacagagaaggtgccgccgcccctgccgccgcc
gtctccgagggctctgatgccgcccccgctcgcccccaggacgtccccaccgctgctcct
gccggggagccgtcttccagggtacacggcaccatcctgagaggcacccaggacccacac
ccaccagacactcgccccgcaagcgcggaggagccggcctgcaagcaggaaagacagagg
cagccagccctgcccgcctcgcccccagggcctggccctggagaccgcatggacgcgtcg
cacctcaagaggctgtggcagcagcgccggagacacgcgctacgccagaggctcctggag
cgcaagcttctgctggctgtgacgccctgggtgggtgacaacgccctgccctgcacacag
gcttcccggagggccggggccgtgcagactcacgccgatggcatcaggatgaagttggag
catgcgcgcctagccagcaccccggtgttcacgctgtttatccagctgctacagatcgac
actgcaggctgcatggaggtggttcgagagaggaaggcccggcctcttccagcacgccag
cccggagccccagctccactgcaggagccctccagtgtccagagcaccccaggccgcctc
ttgccagccgtgccacctcagagcactgcacagaacaccagccacgtggggcacgcgggg
ctggggtcccgccgccccgagcctgccgcgtcccccgtgcccgcgcccgccccctggggc
ccccggcccaagcccaagacagtgtctgagctgctacgagagaagcggctccgggagtcc
cgggccaggaaggccgcccagggccccgtggtgctccagccccagctgctggtttcctcg
cccgtggtcctgcagccccctctgccagcagccgcccaggggcccccggccacgtgcctg
accatcgcaaacccggcgctgtctgggcctgggacccctctggtggccagtgcgagccct
tctggctcctggcaggaggctggggcttcagccaagggtgagaggcctgctagccttccg
gccgggtcccttgcccctgccctcccaggagcccagggcacagcccctgctgcctgcagc
ccgcctgccccgggccccagtccaggccctgtgagcggtcctccaggcaatccgggcccg
ccccgggcccctgccgcatcccaggagcagagcctgcccagagtcctgcctctcttcccc
gccgtccctagccctgctccgcccctcagcctgccgccccagggtggagctcccctgccc
gccagcctgcccctgccagtcacctgggtgctcacagcacagnggctgctccctgtgccc
gtgccagccgtgatcggcgtttccaggccagcggccacccccgaccctgcagggctgccg
gccacactgccgccgcctcctgcagaaaccccgtccccgtccccggccagtgccgacacg
gagccagccacgtcctctggaacactccccccggcgggccccccatcccagggcccagcc
acagaacgcgatcctcgcccagcccccggagtggcccaggtggcccgcgaggcgtcagtg
tccagagcaagcgctccggctggccacacgggagcagagccccccaggccgagccccccg
ccggcccatagcgcccccggctgcaggcgagagccgggggggacaccagggaaagcctcg
gggtccctggagctcagagggcctccgagcccggagaggcccgagaagggcgccctggac
ctgggcctgctctctcaggagagtgaggctgccgcgcggaagtggctgaggggcccgcga
ggggcccgcgtgccccagctggagagcaggctgccctaccagccccccgccctgtgcaac
ctgcgcgtgctggccagcctgctgctccaaaagaaggccctggagcgcagggccgcctcc
ctgctgacccgggggccggcgcgggccggagccgagcccgaagccggagccgtgcaggcc
tccctgggcctggtgcggaggcggctccaggacaacccagcctacctcctgctgaagacg
cggttcctggcggccctggctctccccgcgctgctggccaccctgcctccccgcggcgtt
cccaccaccctgtcgctggccacaggggtggacctggagagtgacgaggacccagggcag
ctggagggcgaggacgcggccgggagccccgcccaggggtccccaaaccctggcaaggcc
tccgccccttcccagccggatgcgtctgatgacctcgatgtgctcaggacgcgtcgcgcc
cgtcatgtccggaagcggaggcggttgctctga
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