Perognathus longimembris pacificus (Pacific pocket mouse): 125351327
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Entry
125351327 CDS
T08928
Symbol
Sox2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04390
Hippo signaling pathway
plop04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
125351327 (Sox2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
125351327 (Sox2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125351327 (Sox2)
Transcription factors [BR:
plop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125351327 (Sox2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125351327
NCBI-ProteinID:
XP_048201968
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All DBs
Position
5:complement(65411608..65414203)
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AA seq
319 aa
AA seq
DB search
MYNMMETELKPPGPQQTSGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQL
GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG
SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY
QSGPVPGTAINGTLPLSHM
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcaactccacggcggcggcggcgggcggcaaccagaagaacagcccg
gaccgcgtcaagcggcccatgaacgccttcatggtgtggtcccgggggcagcggcgcaag
atggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgccgag
tggaaacttttgtcggagacggagaagcggccgttcatcgacgaggccaagcggctgcgc
gccctccacatgaaggaacacccggattataaataccggccccggcggaaaaccaagacg
ctcatgaagaaggataagtacacgctgcccggcggcctgctggcccccggcggcaacagc
atggcgagcggggtcggggtgggcgccggcctgggcgcgggcgtgaaccagcgcatggac
agctacgcgcacatgaacggctggagcaacggcagctacagcatgatgcaggaccagctg
ggctacccgcagcacccgggcctcaacgcccacggcgccgcccagatgcagcccatgcac
cgctacgacgtgagcgccctgcagtacaactccatgaccagctcgcagacctacatgaac
ggctcgcccacctacagcatgtcgtactcgcagcaggggaccccgggcatggcgctcggc
tccatgggctcggtggtcaagtctgaggccagctccagcccccccgtggttacctcttcc
tcccactccagggcgccctgccaggccggggacctccgggacatgatcagcatgtacctc
cccggcgccgaggtgccggagcctgccgcccccagcagactccacatgtcccaacactac
cagagcggcccggtgcccggcacggccatcaacggcacactgcccctctcgcacatgtga
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