Perognathus longimembris pacificus (Pacific pocket mouse): 125351377
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Entry
125351377 CDS
T08928
Symbol
Col6a2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151
PI3K-Akt signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04820
Cytoskeleton in muscle cells
plop04974
Protein digestion and absorption
plop05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125351377 (Col6a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125351377 (Col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125351377 (Col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125351377 (Col6a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125351377 (Col6a2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125351377 (Col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125351377 (Col6a2)
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125351377 (Col6a2)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125351377 (Col6a2)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125351377 (Col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
125351377 (Col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
125351377
NCBI-ProteinID:
XP_048202022
LinkDB
All DBs
Position
5:complement(493472..518744)
Genome browser
AA seq
1025 aa
AA seq
DB search
MTTAEMCWGPLSVLLFWGLLGTLHGQQQEAISPDITVSERNNNCPEKSDCPVNVYFVLDT
SESVAMQSPTDSLLNHMQQFVPQFISQLQNEFYLDQVALSXRYGGLHFSDQVEVFRPPGS
DRASFTKSLQGIHSFRRGTFTGCALANITQEVRQHGGRGVVHFAVVITDGHVTGSPCXGI
KLQAERAREEGIRLFAVAPHRNLNEQGLRDIASTPYELYRSNYATMRADSPEIDQDTINR
IIKVMKHEAYGECYKVSCWRFXGPAGPKGYRGQKGAKGKHGRARRAGTKGRQGDPGIEGP
IXIPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDTGNRGP
DGYPGEAGSPGERGDQGAKGDSGRPGRRGPPGDLGDKGSKGYQGNNGAPGSPGVKGAKGG
PGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDQGLPGP
RGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEPGPP
GPEGGRGDFGLKGAPGRKGEKGEPADPGPPGEPGPRGPQGSPGPEGEPGPPGDPGLTECD
VMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPK
SETGTRVGVVQYSHEGTFEAIQLDDERINSLSSFKEAVKNLEWIAGGTWTPSALKFAYDQ
LIKESRRKKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHERHESENLY
SIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELSVAQCAQRPVD
VVFLLDGSERLGEQNFHKALGFVEEVARRLPLAQGDDDPLRARLALLQFGGPREQLVVFP
LSSDPAAIREALGRAAYLNSFSHVGSGVVGAINGVVRGPRGARRLAELSFVFLTDGVTGN
HSLDEALHSMRKQNVVPTVVAVGSDVDMDVLTKLSLGDRAAIFREKDFNGLVQPSFFDRF
IRWIC
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgccgagatgtgctggggccccctctctgtgctcctgttctgggggctcctg
gggaccctccacggccagcagcaggaggccatctcacccgacatcaccgtctccgagaga
aacaacaactgcccagagaagtccgactgccccgtcaacgtgtacttcgtgctggatacc
tcggagagtgtggccatgcagtcccccaccgacagcctgctcaaccacatgcagcagttc
gtgcctcagttcatcagccagctgcagaacgagttctacctggaccaggtggccctgagc
ntgcgctacggcggcctgcacttctccgaccaggtggaggtgttcagaccccccgggagc
gacagggcctccttcaccaagagcctccagggcatccactccttccgcaggggcaccttc
accggctgcgcgctggccaacataacgcaggaggtccggcagcatgggggccgcggggtg
gtccacttcgccgtggtcatcaccgatggccacgtcactggcagcccctgtnggggcatc
aagctgcaggctgagcgggcccgtgaggaggggatccggctctttgccgtggcgccacac
cggaacttgaatgagcagggcctgagggacatcgccagcaccccttatgagctctaccgc
agcaactatgccaccatgcgggccgactccccggagatcgaccaggacaccatcaaccgc
atcatcaaggtcatgaaacacgaagcctatggggagtgctacaaggtgagctgctggaga
ttcnncggacccgcaggtcccaagggctaccgtggacagaagggtgccaagggcaaacat
gggagagccaggagagccgggacgaaggggcgacagggagatccaggcatcgaaggtccc
attnngattccaggacccaagggtgttcctggcttcaaaggagagaagggtgaattcgga
gcagatggtcggaagggggctcctggcctggccggcaagaatgggactgatggacagaag
ggcaaactaggccgcatcggaccccctggctgcaagggagacacaggaaaccgaggccct
gatgggtacccaggagaagctggaagcccaggagagcgaggagaccaaggtgccaaggga
gactctggccgccctggacgcagggggcccccaggagacctcggggacaaagggagcaag
ggctatcaaggcaacaatggagccccaggaagtccaggtgtgaagggagccaagggtgga
cctgggcctcgtgggcccaaaggcgagccagggcgcaggggagaccccggaaccaagggc
ggccccggcagtgacggccccaagggggagaagggagaccctggcccggaggggccccgg
ggcttggctggagaagtgggcaacaaaggagccaagggagaccaaggattgcctggaccc
aggggcccacagggggctctgggagagcctgggaagcagggctctcggggagatcccggt
gacgctgggccccgaggagactcaggacagccaggccccaagggcgaccccggaaggcct
ggattcagctacccgggaccccgggggacacctggagaaaaaggcgaaccgggcccccca
ggccctgagggaggccgaggggactttggcctgaaaggagcacccggaaggaaaggagag
aagggcgagcctgcagaccctgggccgcctggcgagccaggcccccgaggaccacaaggc
agcccaggacctgagggtgagcctggaccgcccggggaccccggcctcacggagtgtgac
gtcatgacctacgtgcgggagacctgcgggtgctgcgactgcgagaagcgctgtggggcc
ctggatgtggtcttcgtcatcgacagctccgagagcattggctacaccaacttcaccctg
gagaagaacttcgtcatcaacgtggtcaacaggctgggggccatcgccaaggaccccaag
tcggagacaggcacgcgtgtgggcgtggtgcagtacagccacgagggcacctttgaagcc
atccagctggacgacgagcgcatcaactccctgtccagcttcaaggaggccgtgaagaac
ctggagtggatcgccggcggaacctggaccccctccgccctcaagtttgcctacgaccag
ctcatcaaagagagccggcgcaagaagacccgtgtgttcgcggtggtcatcacagacgga
cgccacgacccacgggacgacgacctcaacctgagggccttgtgcgaccgggacgtgacg
gtgacggccattggcatcggcgacatgttccacgagaggcacgagagcgagaacctctat
tccatcgcctgcgacaagccacagcaggtacggaacatgacgctcttctccgacctcgtg
gctgagaagttcatcgacgacatggaagacgtgctctgcccggatccccagatcgtgtgc
ccagagcttccctgccagacagagctgtccgtggcccagtgcgcccagcggccggtggac
gtggtcttcctgctggatggctctgagcggctgggcgagcagaacttccacaaggcgctg
gggttcgtggaggaggtggcgcggcgcctgccgctggcacaaggggacgacgacccgctg
cgtgcccgcctggcgctgctgcagttcggcggtccccgcgagcagctcgtggtcttccca
ctcagctccgaccccgcggccatccgcgaggcgctgggccgcgccgcctacctcaactcc
ttctcgcacgtgggttcgggcgtggtgggcgccatcaacggcgtggtccggggcccccgc
ggcgcgcggcgcctggccgagctgagcttcgtcttcctcaccgacggcgtcacgggcaac
cacagcctggacgaggctctgcactccatgcgcaagcagaacgtggtgcccacggtggtg
gccgtgggcagcgacgtggacatggacgtgctcaccaagctcagcctgggcgacagggcg
gccatcttccgagagaaggacttcaacggcctggtgcagcccagcttcttcgacaggttc
atccgctggatctgttag
DBGET
integrated database retrieval system
