Perognathus longimembris pacificus (Pacific pocket mouse): 125351379
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Entry
125351379 CDS
T08928
Symbol
Col6a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151
PI3K-Akt signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04820
Cytoskeleton in muscle cells
plop04974
Protein digestion and absorption
plop05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125351379 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125351379 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125351379 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125351379 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125351379 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125351379 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125351379 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125351379 (Col6a1)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125351379 (Col6a1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125351379 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
125351379 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
YcaO
GCS2
Motif
Other DBs
NCBI-GeneID:
125351379
NCBI-ProteinID:
XP_048202026
LinkDB
All DBs
Position
5:complement(566125..591221)
Genome browser
AA seq
1027 aa
AA seq
DB search
MRLGLTLLSLLLQACWGAAQDDPGAPKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKAFTXRFIDNLRDRYYRCDRSLVWNAGALHYSDEVEVIRGLMRMPSGRDELKASVDAX
KYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVGHHPXHLEPRLSIIATDHTYRRNFTAADWGQSRGAEETITQTIDTIVEMIK
NNVEQVCCSFECQPARGPPGAPGGPRVXGERGKPGLPGEKGEAGDPVRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGVQGPPGP
KGDAGSFGLKGRKGEAGADGEAGRPGNSGPPGDEGEPGEPGPPGEKGEAGDEGSAGPDGA
PGERGGPGERGPRGTPGVRGPRGDPGESGPQGDQGREGPVGIPGDQGEAGPIGPKGYRGD
EGPPGPEGLRGAPGPVGPPGDPGLMGERVSMAPPGNGTEGFPGFPGYPGSRGPPGLNGTK
GYPGLKGDEGEAGEPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSRVELVKFEPGQSHA
GVVQYSHNQMQEHVDMRSPHVRNAQEFKEAVKKLQWMAGGTYTGEALQYTRDRLLPPTQN
NRIALVITDGRSDTQRDTTPLNVLCGPDIQVVSVGIKDVFGFVASSDQLNVISCQGVLSQ
GRPGLSLVKENYAELLDDAFLKNVTAQICIDKKCPDYTCPITFSSPADITILLDGSASVG
SHNFETTKHFAKRVAERFLSAGRESPGHQARVAVVQYSGRGQQQPGRAALQFLQNYTVLA
GTVDGMDYFNDATDVTDALGYVTRFYREASAGAAKKRLLLFSDGNSQGATAADIEKAVQE
AQRAGVEIFVVVVGPHVNEPHVRVLVTGKTAEYDVSFGERHLFRVPSYGALLRGVYYQTV
SRKVAQG
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgggcctcacgctgctgtccctgctgctgcaagcctgctggggagctgcccag
gacgatccaggggccccgaaggccattgccttccaggactgccctgtggacctgttcttt
gtgctggacacttctgagagcgtggccctgaggctcaagccctacggtgccctggtggac
aaggtcaaggccttcaccnagcgcttcatcgacaacctgagagacaggtactaccggtgt
gaccgcagcctggtgtggaatgcaggggcgctgcactacagcgacgaggtggaggtcatc
cgcgggctcatgcgcatgcccagcggccgggacgagctcaaggccagcgtagatgcantc
aagtactttggcaagggcacctacaccgactgcgccatcaagaaggggctggaggagctg
ctcattgggggctcccacctgaaggagaacaagtacctgattgtggtgacggacgggcac
ccgctggagggctacaaggagccctgcgggggcctggaggacgcagtgaatgaagccaag
cacctgggtgtcaaagtcttctccgtgggccatcacccctgacacctggagccacgccta
agcatcattgccacggaccacacttaccggcgcaacttcaccgcggcagactgggggcag
agccgcggggcagaggagaccatcactcagaccatcgacaccatcgtggaaatgatcaaa
aacaacgtggagcaagtgtgctgctccttcgagtgccagcctgccagaggacctccaggg
gccccggggggaccccgggtatgaggtgagcgaggaaagccaggtctccccggagagaaa
ggagaagctggagaccctgtgaggcccggggacctgggacccgtggggtaccaggggatg
aagggagaaaagggaagccgaggggagaagggctccaggggacccaaaggctacaagggc
gagaagggcaagcgtggcatcgatggggtggacggcatgaagggggagacggggtaccca
ggcctgcctggctgcaagggctcaccggggtttgacggcgttcaaggacctcctggccca
aagggagatgctggttccttcggactgaaggggagaaaaggtgaagctggagcagacggg
gaggccgggagaccggggaactcaggaccacccggagacgagggtgagccgggagagcct
gggccccccggagagaaaggagaggccggtgacgaggggagcgcaggccctgacggtgcc
ccgggagagaggggtggccctggagaaagaggacctcgggggaccccgggcgtgcggggg
ccgagaggagacccaggcgaatctggaccccaaggtgaccagggaagagaagggcctgtt
ggcatcccaggagaccagggcgaggctggccccattggacctaaaggataccgcggtgac
gagggtcccccggggcctgagggtctcagaggcgctccaggacctgtcgggcccccagga
gacccggggctgatgggtgaacgggtaagtatggccccccctggaaatggcaccgagggc
ttccctggctttccgggatatccaggcagcaggggcccccctgggctgaacggaacaaaa
ggctaccctggcctcaagggggatgaaggagaagctggagagcccggagaggataacaac
gacatttcccctcgtggggtcaaaggagcaaaagggtaccgaggcccagaaggcccacag
ggacccccaggacacgtgggaccacctggaccagacgaatgtgagattttggacatcatc
atgaaaatgtgctcctgttgtgagtgcaagtgtggccccatcgacatcctcttcgtgctg
gacagctctgagagcattggcctgcagaatttcgagattgccaaggacttcatcattaag
gtcattgaccgtctgagcagagtggagctggtcaagtttgagccgggccagtcccacgcc
ggtgtggttcagtacagccacaaccagatgcaggagcacgtggacatgaggagcccgcac
gtccgcaatgcccaggagttcaaggaagccgtgaagaagctacagtggatggcgggcggc
acgtacacgggggaggcactgcagtacacccgggaccggctgctgccacccacccagaac
aaccgcatcgctctggtcatcacggacgggcgctcggacacccagagagacaccacgccc
ctcaacgtgctgtgcggccccgacatccaggtggtctccgtgggcatcaaagacgtgttt
ggctttgtggccagctctgaccagctcaacgtcatctcctgccaaggcgtcttgtcccaa
ggccggcccggcctctctctggtgaaggagaactatgcagagctgctggacgacgctttc
ctgaagaacgtcaccgcccagatctgcatagacaaaaagtgtccggattacacctgccca
atcaccttctcctccccggccgacatcaccatcctgctggacggctcggccagcgtgggc
agccacaacttcgagaccaccaagcacttcgccaagcgtgtggccgagcgcttcctgtcg
gccggccgggagagccccggccaccaagcgcgcgtggccgtggtgcagtacagcggccgg
ggccagcagcagccggggcgcgcggccctgcagttcctgcagaactacaccgtgctggcc
ggcaccgtggacggcatggactacttcaacgacgccacggacgtcaccgacgccctgggc
tacgtcactcgcttctaccgcgaggcgtccgcgggggccgccaagaagaggctgctgctg
ttctccgacggcaactcgcagggggccacggcggcggacatcgagaaggccgtgcaggag
gctcagcgcgcgggcgtcgagatcttcgtggtggtggtgggcccccacgtgaacgagccc
cacgtccgcgtgctggtcaccggcaagacggccgagtacgacgtgtccttcggcgagcgc
cacctgttccgggtgcccagctacggggccctgctccgtggagtctactaccagacagtc
tccaggaaggtggcgcagggctag
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