Perognathus longimembris pacificus (Pacific pocket mouse): 125351382
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Entry
125351382 CDS
T08928
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125351382 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125351382 (Col18a1)
00535 Proteoglycans [BR:
plop00535
]
125351382 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125351382 (Col18a1)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125351382 (Col18a1)
Proteoglycans [BR:
plop00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125351382 (Col18a1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125351382 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125351382
NCBI-ProteinID:
XP_048202035
LinkDB
All DBs
Position
5:complement(865233..954370)
Genome browser
AA seq
1337 aa
AA seq
DB search
MAPRWPWLLPRWRRPLLDALAAFVLLLGVGAAAAEPESAVEEVGLPQLLREPLPPQVTHI
EDPDVGPAFHFGPGAHSGQGAQSHFPRLSFRDFSLLFHVRPATTGAGVLLAVTDAAQAVV
SLGVKLSGAQGGRRNVSLLYTEPGAARTRTAASFRLPARAGRWTRFALSVDGGTAALYLD
CEELQRVPLARSSRGLELEPGARLFVGQAGGADPDKFEGAIAELRVRGDPKVSPAHCLEE
EDEDEDDGVSGDFGSGLEDSHRPHREDVDSPLQPGLPLPPPVTLPPLAEGSHLEDSRTEE
AEDEIVVDSFGAAPTLPDSESAGVWDEGVQSPEGGWKEQKGESGVPGPGPVVPGSDVQPP
PGAQGPPGPPGPPGKDGTPGRDGKPGGPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGV
GPRGPPGPQGPPGPPGAPFRQDKLSFIDMEGSGFSGDLETLRGPRGFPGPPGPPGVPGLP
GEPGYFGFNRSHAHKHGPAGLPGVPGQVGPPGSPGIPGPPGPPGKEGPPGAPGQKGSLGV
AGAPGPQGIKGDPGPVGAPGERGLAGLPGAAGPPGPPGPPGPPGPPGPGFAAGFDDMEAS
GMPPWSTVPGATGPQGPPGVPGLKGEPGVTGPPGAKGEAGVDGARGFPGLPGRAGSAGPL
GPKGDTGSQGAKGEPGKDGVGQPGLPGPPGPPGPVVYVSDQDGQLIVAGVAGHEGRHRHE
GLMGPVGLKGDLGSKGEQGLPGPKGEKGEPGSLYIPDSRALGLTQKGAKGEPGLRGPPGP
YGRPGYKGEIGIPGRPGRPGVNGLKGEKGEPGDARLGFGFRGTPGPPGPPGPPGPPGPPG
TPIYDSNAFVEPGHHGPKIVQGALGPSGPKGDKGEVGPPGPPGQFPLDLRNLEAKMKGNK
GDRGDPGQKGERGEPGPSSGFFGSSVPGPPGPPGPPGYPGIPGQKGASIPGPPGPPGPQG
PPGVGYEGRQGPPGPPGPPGPPSFPGPHRHTVSVPGPPGPPGPPGPPGAMGASSGQVRIW
ATYQTMLDRVREVPEGWLIFVVEREELYIRVRDGFRKVLLEAQTPLPQGSGNEVAALQPP
AVQLQEGSLYTQREASYSTERPWRADDNLAIPPLLLDPQPYPGAPRRHHHHHHHHHHSAY
VHLRPSYPTSSPAHTHQDFQPVLHLIALNSPLPGGMRGIRGADLQCFQQARAAGLPGTFR
AFLSSKLQDLYSIVRRADRASVPIVNLKDEVLAPSWDSLFSGSQGQLQPGTRIFSFDGRD
VLQHPAWPQKSVWHGSDPSGRRLTESYCETWRTESASARGQASSLLAGKLLEQNVAGCHN
AYVVLCIENSFMTSSSK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggtggccctggctgctcccgcggtggcggcgtcccctcctggacgcgctc
gccgccttcgtcctgctgctgggggtcggcgcggccgcggcggaaccagagagcgccgtg
gaggaggtggggctgccgcagctcctcagggagcccctgcccccgcaggtcacccacatc
gaggaccccgacgtgggccccgccttccacttcggcccgggcgcccacagtggccagggg
gcgcagagccacttccccagactctccttccgcgacttctcgctgctgttccacgtccgg
ccggccacgacgggcgcgggcgtgctgctggccgtcacggacgcggcgcaggccgtggtg
tcgctgggcgtgaagctctcgggcgcgcagggcgggcgccggaacgtctcgctgctctac
accgagcccggcgcggcgcgcacccgcacggccgccagcttccgcctgcccgcgcgcgcc
ggccggtggactcgcttcgcgctcagcgtggacggtggcaccgcggcgctctacctggac
tgtgaggagctccagagggtgccgttggctcggtcatcgcggggcctggagctggagccg
ggagcccgcctcttcgtgggtcaggctggaggcgcggaccctgacaagttcgagggggcg
atcgcagagctgagggtgcgtggagaccccaaggtgagccccgcacactgcctggaggag
gaagacgaggatgaggacgacggggtatctggagattttggaagtggcctcgaggacagc
cacaggccccaccgagaggacgtggactcgcccctgcagcctggcctgcccctgcctccc
ccggtcacgctcccgcccttggctgaagggagccacctggaggattccagaactgaagaa
gccgaggacgagatcgtggtggattcattcggagcagctcccacccttcctgactcagaa
tcggctggcgtgtgggacgaaggtgtccagagccctgagggaggctggaaggagcagaag
ggagagtccggtgttccggggcccggcccagtggtgccgggctccgacgttcaacctccc
cctggagcacaagggcccccaggaccgccaggaccaccagggaaggacggcaccccagga
agggacggcaagccagggggccctggtgaagacggaaaacctggggacactggaccacag
ggcttcccagggaccccgggagatgtgggcccaaagggcgagaagggagatcctggcgtt
ggcccaagaggacctccaggaccccaaggccctccagggcctccgggagcccccttcaga
caagacaagctgtcattcatcgacatggagggctccggcttcagtggggacctggagacc
ctcaggggtccccgaggcttccctggccccccagggccccctggcgtcccaggcctgccg
ggagagcctggctacttcgggttcaatagatcacatgcacacaagcatggaccagcaggc
cttcctggagtgcctgggcaggtggggccccccgggtctcccggcatcccggggccccca
ggacctccaggcaaggagggccccccaggagcaccaggccagaagggcagccttggtgtc
gccggcgccccaggacctcagggaatcaagggagaccctggccccgtgggagcacctggg
gaacgcggcttggccgggttgcctggggcagctggacctccaggacctccaggacctcca
ggaccccccgggccaccaggaccaggatttgccgctggatttgatgacatggaggcctct
gggatgccaccctggtctactgtgcctggcgccaccggcccacagggcccgcctggtgtg
ccaggactcaagggggagccgggagtgaccgggcctccgggagctaagggagaagctggg
gtggacggagcccgggggtttcctggccttcctggcagagcgggctcagctgggcccctg
ggaccaaaaggagacacagggagccagggagccaagggcgagccagggaaggacggagtt
gggcagccgggtctcccagggcccccagggcccccagggcccgtggtctacgtgtcggat
caggacggacagctgatagtggcaggtgtggcaggacatgagggccggcacaggcacgag
ggactgatgggacctgttggactaaagggtgacctgggctccaaaggcgagcagggcctc
ccaggccccaagggtgagaagggggagcctggcagcctctacatccccgacagcagagcc
ctgggcctcacccaaaaaggtgccaagggagagccgggcctccgaggacccccgggccca
tatgggcgacccgggtacaagggagagattggcattcctggacggccgggtcgccccggg
gtgaatgggttgaagggagagaagggggagcctggagacgccagactgggctttggcttc
aggggaacgccgggccccccgggccccccagggcccccaggacccccaggacctcccggg
acgcccatctacgacagcaatgcatttgtggagcctggccaccatgggccgaaaatagtg
caaggggccttggggccatccggaccgaagggtgacaagggagaagtgggtccccccggg
ccgccaggccagtttcccttggacctccgtaacttggaagctaagatgaaggggaacaag
ggagaccgcggggaccccggacagaaaggcgagaggggcgaacctgggcccagcagtggc
ttcttcggctcaagtgtgcctgggccgcccggcccccccggcccccccggctaccctggg
attccgggtcaaaaaggagcgagcatcccgggcccgcccggcccgcccgggcctcaggga
cctcccggcgtcggctatgaggggcgccagggccctcctggccccccaggccctccgggg
cccccctcatttcctggccctcacaggcataccgtcagtgttccaggccccccgggcccc
cctggacccccagggccccccggagccatgggagcctcctcagggcaggtgaggatctgg
gccacctaccagaccatgctggacagggtgcgcgaggtgcccgagggctggctcatcttc
gtggtggagagggaagagctctacatccgggtccgcgacgggttccggaaggtcctgctg
gaggcccagacaccactcccacagggttcgggcaacgaggtggccgccctgcagcctcca
gcggtgcagctacaggagggcagcctgtacacccagcgggaggcctcctactccacagag
cggccctggcgggcagacgacaacctggccatccctcccctcctgctggaccctcagcct
taccccggagccccacgccgccaccaccaccaccaccaccaccaccaccacagcgcctac
gtgcacctccggccatcctaccccaccagctcccctgcccacacccaccaggacttccag
cccgtgctccacctgatcgcgctcaacagcccactgccgggcggcatgcgcggcatccga
ggggccgacctccagtgcttccagcaggcgcgggccgcggggctgcccggcaccttccgc
gccttcctgtcctcgaagctgcaggacctgtacagcatcgtgcgccgcgccgaccgggcg
tcggtgcccatcgtcaacctcaaggacgaagtgctggcccccagctgggattccctgttc
tccggctcccagggccagctgcagcccggcacccgcatcttctctttcgacggcagagac
gttctgcagcaccctgcctggccccagaagagtgtgtggcacggctcagaccccagtggg
cgcaggctgaccgagagctactgtgagacatggcggacggagtccgcctcggccaggggc
caggcgtcctctctgctggcaggcaagctgctggagcagaacgtggcgggctgccacaat
gcctacgtcgtcctctgtattgagaacagcttcatgacctcctcttccaagtag
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