Perognathus longimembris pacificus (Pacific pocket mouse): 125351529
Help
Entry
125351529 CDS
T08928
Symbol
Ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125351529 (Ltn1)
04121 Ubiquitin system [BR:
plop04121
]
125351529 (Ltn1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125351529 (Ltn1)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125351529 (Ltn1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125351529 (Ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
HipN
Motif
Other DBs
NCBI-GeneID:
125351529
NCBI-ProteinID:
XP_048202308
LinkDB
All DBs
Position
5:10508560..10553794
Genome browser
AA seq
1766 aa
AA seq
DB search
MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSHSDLGYVPAIQGAEEIDNL
VDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCSDRDTEIVKGVLPYWPRIFCKISLDHDRR
VREATQQAFEKLILKVKKHLAPYLKSLMGYWLMAQCDTYAPAALAAKEAFEAAFPPSKQP
EAIAFCKDEIATVLQDHLLKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKKLLCLIP
DNELDSLEERFKSLLSQNKFWKYGKHNIPQIRSAYFELVSALCQRIPKLMNEEASKVSPS
VLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSIVVREGGRGLATVIY
PYLLPFISKLPQSITDPKLDFFKNFLTSLVAGLSTERMKTSCSECSAVITAFFECLRFIM
QQNLGEEEMEKMLVNDQLIPFIDKVLKDPGLQHEPLYNHLAEMLTSWEAKADMEKDGKTS
YNLENVLLNFWERLSEICVKKVNEPEADVNSILSVSNLLQVLQKPKSSLKSNKKKNGKVR
FADEIAEVIQENEKCTSSEGENREGSELVTDSCLTYNSSDILSPLRTKPLEDLVCKLAEL
SINYVNEHKSEQHLQFLSTLLDSFSSSHLFKVLLGDDNGNITKAKPYEITKLAQKNPAVQ
FLYRKVIGWLSEGPRKDVSYLVDILYSALRCCDSDMERKVVLDDITKEDLEWNSLLQVIE
KACSSSHKHALVIPWLKGNILGEKLATLADCLCNKDVVSTASSESYFSIQWTLLSLVLSQ
RVKNDYLIGEVYIERIIVKLHETLSKTKELSEAENNDSAVSFICDVAYNYFSSAKGCLLI
PSSEDLLLTLFQLCAENKEKTHLPDFLVCKLKCTWLTGVDVLVHHIGSTYKQSTFLCLSA
LWLKNQVQSSSVDNTSLQALLSAVDDLLHILVESEDIYLLEFYIGNVMPNNSEWESMRQS
LPIQWLYRPLLEGRLSINYECFKTDIKEQDIKTLPSHLCTSALLSKMILVALKKKMVLEN
NVLEKITAELLYSLQWCEELDNPPVVLNGFCEMLQKMNITYDNLCVLGNTSDLFQLLFNR
SRENGTLWSLIIAKLILSQSVSTDEIKPHYKRKESFFPLTEGNLHTIQNLCPFLSKEEKK
EFSAQCIPALLGWTKEDLCRTDGGFGHLAIFNSCLQTRSIDDGELLHGILKIIISWKKEH
EDIFLFSCNLSEASPEVLGINIEIIRFLSQFLKYCSYPLAESEWDFIMCSMLAWLETTNE
NQALYSIPLVQLFACVSCDLACDLSAFFDSATEDTVGNLPVNLLSEWKEFFSQGIHSLLL
PLLVTVTGENKDMSETSFQNAMLKPMCETLTYISKDQLLSHKLPSRLVAGQKTDLPVYLQ
TLLNTLVPLLLFRARPVQIAAYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPVALMS
LLRTLEDLLENVLGCIPVGQIITIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYS
MYLRKTKSLNKLLYHLFRLMPENPTYGETAIEVSSKDPKTFFTEELQLSIRETSTLSYQI
PHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSSVLSFQEISSVQTSTQL
FNGMTVKARATTREVMATYSIEDIVIELIIQLPSNYPLGSITVESGKRIGVAVQQWRNWM
LQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKK
FHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggaagaataagcagcggaccaagggcaacctgaggccttcaaacagcggccga
gctgcagaactcttggccaaagaacagggaactgtgcctggatttattggttttggaacg
tctcacagtgacctgggctatgttcctgctattcaaggagctgaagaaatagacaatctc
gtagattctgatttcagaatggtgctgcggaaactttctaagaaagatgttacaacaaaa
ttaaaggcaatgcaggaatttggaaccatgtgttcagatagagacacagaaattgtgaaa
ggagtccttccctattggccaagaattttctgcaaaatttcacttgatcatgaccgccgt
gttcgagaagccacacagcaagcttttgaaaaacttatccttaaagtaaagaagcacttg
gctccctatttaaaaagcttaatgggctattggctcatggctcagtgtgatacatatgcg
ccagcggcacttgcggcaaaagaagcctttgaagctgcttttcctcccagcaaacaaccc
gaagccatagcattttgtaaagatgaaattgcaactgtcctgcaggatcatcttctaaaa
gaaacacctgatacactcagtgacccacaaactgttccagaagaagaacgggaagctaaa
ttctaccgagttgtaacttgttctttattggcattgaagaaattgctttgcctcatacct
gataatgagcttgattctctggaggagcgatttaaatctctgttgtcacagaataagttt
tggaagtatggaaaacacaatatacctcagattcgatcagcgtattttgagttagtttct
gctttgtgccagcgcatcccaaagttgatgaatgaggaagcttctaaagtgagcccatct
gttctccttagcattgatgacagtgaccccattgtctgcccagctctctgggaagctgtt
ctctacacacttacaactattgaggactgttggcttcatgtaaatgcaaaaaaaagtgtt
tttcccaaactctcaattgtggttcgtgaaggtggtcgaggcctagctactgtcatatat
ccttaccttttgccatttatcagcaaactccctcagtccatcacagatccaaagctggat
ttctttaaaaatttcctcacctctctagttgcagggctgtcaacagagagaatgaaaaca
agctgttcagaatgctcagcagtaataactgctttttttgaatgcttacgttttataatg
caacaaaacttaggtgaggaagagatggaaaagatgctcgtcaatgaccagttgattcct
tttattgataaagttctcaaagacccaggattgcaacatgagccactatataaccatcta
gctgaaatgttaacttcctgggaagctaaagcagacatggagaaagatggtaaaacgtct
tacaacctggagaatgtactcctgaatttctgggaaagactgtcagagatctgtgtcaag
aaagtcaatgagccagaagcggatgttaatagcattttgagtgtatctaacctcttgcag
gttcttcagaagccaaagagctcactgaaatcgaataagaaaaaaaatggtaaggttaga
tttgccgatgagattgctgaagttattcaggagaatgaaaaatgtacatcttccgaagga
gagaaccgtgaaggttctgagttagtgactgactcttgtcttacttataattcttcagac
atcttgtctcctttaaggacgaaacctttggaagacttggtctgtaaacttgcagaactg
agtattaattacgtaaatgaacacaagtcagaacaacatctacagttcctttctactcta
cttgactccttctcttcaagccacctttttaaagtgctccttggtgatgacaacgggaat
attaccaaagccaaaccctatgaaataaccaaacttgcacaaaagaatcctgcagtgcag
tttctgtaccgtaaggtaataggttggcttagtgaaggtccaaggaaggatgtcagttac
ctggtggacattttgtatagtgccctccgttgctgtgacagtgatatggaaagaaaggtg
gtcttggatgatataaccaaggaggacctggaatggaattctctacttcaggttattgaa
aaggcatgctctagttcacataaacatgctttagtaattccttggttaaaaggcaatatc
cttggagagaaattggctaccttggcagattgtctttgtaacaaggatgtggtatctaca
gcatcatctgaatcttacttctcaattcagtggactcttctaagcctggtattatctcaa
cgtgttaaaaatgattacttgattggagaagtatatattgaaagaattattgttaaactt
catgaaactttatccaaaacaaaggagttgtcagaagctgaaaataatgactcagcagta
tcttttatctgtgatgtggcctataactatttcagttcagcaaaaggatgcttgctaata
ccatcatctgaagatttattattaactctctttcagttatgtgctgagaacaaagagaaa
acacacttgccagattttctagtctgtaaactgaaatgtacgtggctcactggtgtagat
gtgttggtccatcatattggcagtacgtataaacagagtacctttctatgtttgtctgct
ctgtggctgaagaaccaagttcagtcttcatctgtggataatacaagcctacaggccctt
ttgtctgctgttgatgatttgttacatatacttgtagagagtgaagatatttaccttctg
gaattctatattggaaacgtaatgccaaacaacagtgagtgggaaagtatgagacagtct
cttcctattcagtggttatacagacctcttttagagggaagattgagtataaattatgaa
tgtttcaaaacagatattaaggaacaagatataaagacacttcccagtcatttgtgtact
tcagcattattgagcaaaatgatcttagttgcactgaaaaagaaaatggtcctagaaaat
aatgtgcttgagaaaataactgcagaactgctctattcactgcagtggtgtgaagaacta
gacaatccacctgttgttctaaatgggttttgtgaaatgcttcaaaaaatgaatattacc
tatgataacttatgtgtacttggcaatacttctgacctttttcagctgttatttaacaga
tccagggaaaatggcacactttggtctctcattattgctaaattaatcctttcccaaagt
gtttcaactgatgaaataaagccacattataaaagaaaagaaagtttttttccactaaca
gaaggtaatttgcataccattcaaaatctctgtccatttttatcaaaagaagaaaagaaa
gaattcagtgctcagtgtatacctgctcttttgggctggactaaggaagacctttgccga
actgatggaggttttggacatctagccattttcaattcttgtctgcaaactcgaagcata
gatgatggagagctattgcatggtatattaaagattataatatcctggaagaaagaacat
gaagatatttttctttttagttgtaatctatcagaagcaagtccagaagtactgggtata
aacatagaaataatccggttcctttcccagtttctgaaatactgctcatatcctttagca
gagagtgaatgggacttcatcatgtgttccatgttggcttggctggagacaacaaatgaa
aatcaagcattgtattctattccactcgtccaattgtttgcctgtgtcagctgtgatttg
gcctgtgatctcagtgctttttttgattcagcaactgaggatactgttggcaatcttcct
gtaaatctactcagtgaatggaaagaatttttttcccaaggcatccacagtttgctttta
cctcttttggtcactgttacaggagaaaataaagatatgtctgaaacatcctttcagaat
gcaatgctgaagcccatgtgtgaaacattaacatatatctcaaaggatcagcttttgagt
cacaaactgccttcaagattggttgctggccaaaaaacggacttgccagtgtatctccag
actttgttgaatacgttggtcccattactcctcttcagagcaagacctgtgcaaattgct
gcttatcatatgctctacaagttgatgcctgagttaccacaatatgatcaggataatctg
aagtcatatggagatgaagaagaagaaccagccttatcaccaccggtggcgctgatgtct
cttcttagaacgctagaagatttgttagaaaatgtcttgggatgtattcctgttggacag
ataattactattaagccactgagtgaagacttctgttatgtcctgggatatctcctcact
tggaaattaatacttactttcttcaaagctgcttcatcgcagcttcgagctctgtattcc
atgtaccttcggaaaacaaagagtttgaataaattactctaccacctgttcagactgatg
ccagaaaatccaacctatggggagacagctattgaggtctctagtaaggaccctaaaaca
ttcttcactgaagagctccagctgagtattagagaaacatcaactctttcctaccagatt
ccacacttggcttgctcagtctatcacatgacactgaaggaccttcctgccatggtgagg
ttgtggtggaatagcagtgagaagcgtgttttcaacattgtagacagattcacaagcaag
tatgtcagcagtgttctttctttccaagaaatatcttccgtgcaaacaagtacgcagctg
tttaatggcatgacggttaaagctcgagctactactcgagaagttatggctacttactca
attgaagacattgtcattgagcttataatacagctgccttcaaattatccactgggttca
ataacagtggaaagtgggaaaagaataggggtggctgttcagcagtggcggaactggatg
ttgcagttaagcacttacctcactcatcagaatggaagtattatggaaggcttagcatta
tggaaaaataatgtagacaaacgttttgagggagttgaagattgcatgatttgcttctca
gtcattcacggtttcaactattctcttcccaaaaaagcctgtagaacatgcaagaaaaaa
ttccattctgcctgcctatacaaatggtttacatctagcaacaaatccacttgtccatta
tgtcgtgagacctttttctga
DBGET
integrated database retrieval system
