Perognathus longimembris pacificus (Pacific pocket mouse): 125351571
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Entry
125351571 CDS
T08928
Symbol
Robo1
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04360
Axon guidance
plop04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125351571 (Robo1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
125351571 (Robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125351571 (Robo1)
Cell adhesion molecules [BR:
plop04515
]
Immunoglobulin superfamily
ROBO family
125351571 (Robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
C2-set_3
Pur_ac_phosph_N
Ig_PDGFR_d4
Unc5_NetrinR_N
DUF7908
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
125351571
NCBI-ProteinID:
XP_048202381
LinkDB
All DBs
Position
5:complement(20945594..21313262)
Genome browser
AA seq
1614 aa
AA seq
DB search
MIAEPAHFYLFGLICLCSGSRLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI
EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH
NASLEVALLRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT
IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSA
EFKCEARGDPVPTVRWRKDDGELPKARYEIRDDHTLKIRKVMASDMGSYTCVAENMVGKA
EASATLTVQVGSEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSY
QPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPV
IRQGPVNQTVAVDGTLVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLETGVLQIRYAK
LGDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNT
VTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENVKTETFAIKGLKPNAIYLFLVRA
ANAYGISDPSQISDPVKTQDVPPTSQGVDHKQVQRELGNVVLHLHNPTILSSSAIEVHWT
VDQQSQYIQGYKILYRPSGVSHGDSEWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFN
EFQGADSEIKFAKTLEEAPSAPPQSVTVAKNDENGTAILVSWRPPPEDTQNGMVQEYKVW
CLGNETKYHINKTVDGSTFSVVIPSLVPGVRYSVEVAASTGAGPGVKSEPQFIQLDSHGN
PVSPEDQVSLAQQISDVVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIR
KVPSFTFTPTVTYQRGGEAVSSGGRPGLLNISEPAAQPWLADTWPNTGNNHNDCSINCCT
SGTGNSDSNLTTYSRPADCIANYNNQLDNKQTNLMLPESTVYGDVDLSNKINEMKTFNSP
NLKDGRFVNPSGQPTPYATTQLIQSNLSHNMNNGSEDSSEKHWKPPGQQKQEVAPIQYNI
IEQNKLNKDYRANDAIPPTIPYNQPYDQNTGGSYNSSDRGSSTSGSQGHKKGARTPKVPK
QGGMNWADLLPPPPAHPPPHSNSEEYSVCVDESYDQEMPCPVPPARMYLQQDELEEEEDE
RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEEIGHVQHQPDRRRQPV
SPPPPPRPISPPHTYGYISGPLVSDMDTDAPEEEEDEADMEVAKMQTRRLLLRGLEQTPA
SSVGDLESSVTGSMINGWGSASEEDNISSGRSSVSSSDGSFFTDADFAQAVAAAAEYAGL
KVARRQMQDAAGRRHLQASQCPRPTSPVSTDSNMSAAVMHKARPTKKQKHQPGHLRREAY
TDDLPPPPVPPPAIKSPTVQSKGQLEVRSVMVPKLPSIEARTDRSSDRKGGSYKGREVLD
GRQVADLRTNPGDPREAQEQQNDGKGRGNKATKRDLPPTKTHLIQEDILPYCRPTFPTSN
NPRDPSSSSSMSSRGSGSRQREQANVGRRNIAEMHVLGGYEREENNEELEETES
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcggagcctgctcacttttacctctttggattaatatgcctctgttcaggctcc
cgccttcgacaggaagattttccacctcgaattgttgagcacccttcagacctcattgtc
tcaaaaggagaacctgcaaccttaaactgtaaagcagaaggccgccccacacctacaatt
gagtggtacaaagggggcgagagagtggagactgacaaagatgaccctcgctcacaccga
atgttgctgccaagtggatctttatttttcttgcgaatagtacatggacggaaaagtagg
cctgacgaaggggtctatgtctgtgtagcaaggaactaccttggagaggctgtcagccac
aacgcatcgctggaggtagctttactacgggatgacttcagacaaaacccttccgatgtc
atggtggcagtaggggagccagcagtgatggaatgccagccgcctcgtggccatcccgaa
cccaccatttcatggaagaaggacggttctcctcttgatgataaagatgaaagaataact
atacgaggaggaaaactcatgattacttacacccgtaaaagcgatgctggcaaatatgtt
tgtgttggtaccaacatggttggagaacgagagagcgaggtagctgagctaactgtttta
gagagaccatcatttgtgaagagacctagtaacttggcagtaactgtggatgacagtgct
gaatttaagtgtgaggcccgtggagaccctgtgcctacagtacgatggaggaaagatgat
ggggagctgcccaaagccagatatgaaatccgagatgatcatacattgaaaattcgcaag
gtgatggctagtgacatgggatcatacacttgtgtggcagaaaatatggttggaaaagcc
gaagcatccgctaccttgacagtccaagttgggtctgaacctccacattttgttgtgaaa
ccacgagaccaggtggtggccttgggacgcactgtgactttccagtgtgaagcaacagga
aaccctcagcctgctatattttggcggagagagggtagtcagaaccttctcttctcatac
cagccaccacagtcttccagtcgattttcagtgtcccagactggggacctcaccattact
aatgtccagagatcagatgtcggctattacatctgccagactttaaatgttgctggaagt
atcatcacaaaagcatatttggaagttactgatgtgattgcagaccgccctcccccagtc
attcgacaaggccctgtgaatcaaactgtagcagtggatggaactttagtcctcagctgt
gtggccacaggcagtccagtgcccacaattctgtggagaaaggatggagtcctggtttca
actcaagattctcgaatcaaacagctggaaactggggtgctacagatccgatatgcaaag
ctgggcgatactggccggtacacctgcactgcatccacccccagtggcgaagcaacatgg
agtgcttacatcgaagtgcaagaatttggagttccagttcaacctccaagacccactgac
cccaatttaatccccagtgccccttccaaacctgaagttacagatgtcagcagaaacaca
gtaactttatcatggcagcccaatttaaattcaggagcaactccaacatcttatattata
gaagctttcagccatgcatctgggagcagctggcagactgtggctgagaatgtaaaaaca
gaaacatttgccatcaaaggactcaaacctaatgcaatttacctttttcttgtgagagca
gcaaatgcatatggaattagcgatccaagccaaatatcagacccagtgaagacccaagat
gtcccaccaacaagccaaggggtggaccacaagcaggtgcagagggaactggggaatgtc
gtcctgcacctccacaaccctaccatcctctcttcttctgccatcgaagtacactggact
gtggatcaacagtcccagtacatacaaggctataaaattctctaccggccatctggtgtc
agccatggcgattcagagtggttagtttttgaagtgagaacaccaaccaaaaacagtgtg
gtcatccctgacctgagaaagggcgtcaactatgaaattaaggctcgccctttcttcaat
gaatttcaaggagcagatagtgaaatcaaatttgccaaaaccttagaagaagccccaagt
gccccaccccagagtgtaactgttgcaaagaatgatgaaaatggaactgcaatccttgtc
agctggcgcccacctccagaagatacccaaaatggaatggtccaagaatataaggtttgg
tgtctgggcaatgagacgaaataccatataaacaagacagtggatggctccaccttctct
gtggtcattccctctctggttcctggggtccgttacagtgtagaggtggcagccagtacg
ggggctgggcctggagtgaagagcgagcctcagttcatccagttagattctcacggaaac
ccggtgtcaccagaggatcaggtcagcctggctcagcagatttccgatgtggtgaagcag
ccagcattcatcgctggaatcggggcggcctgctggatcattctcatggttttcagcatc
tggctttatcgacaccggaagaagaggaatggactcaccagtacttatgctggtatcaga
aaagtcccgtcctttaccttcacaccaacagtaacttatcagagaggaggtgaagctgtg
agcagtggagggagaccaggacttctgaacatcagcgagcctgctgcacagccctggttg
gccgacacgtggcccaacactggcaacaaccacaatgactgctccatcaactgctgcacc
tcaggcactgggaacagcgacagcaacctgaccacctacagtcgtccagctgattgtata
gcaaattataacaaccaactggataacaaacaaacaaatctgatgctccctgagtcaact
gtttatggtgatgtggaccttagtaacaaaatcaatgagatgaaaaccttcaatagccca
aatctgaaggatgggcgttttgtcaatccatcagggcagcccactccttatgccaccacc
cagctcattcagtccaacctcagccacaacatgaacaatggcagcgaggattcgagtgag
aagcactggaagccacctggtcagcagaagcaagaagtcgccccaattcagtataacatc
atcgagcaaaacaagctgaataaagattatcgagccaatgatgcaattcctccaactatc
ccatacaaccaaccgtacgatcagaacacaggaggatcttacaacagctcagatcggggc
agtagcacgtctgggagtcaagggcacaagaaaggggcacgaacaccgaaggtaccaaaa
caaggtggcatgaactgggcagacttgcttcctcccccaccagcacatcctcctccacat
agcaacagtgaagagtacagcgtttgtgtagacgaaagctatgaccaagaaatgccatgt
cctgtaccaccagcaagaatgtacttgcaacaggatgaattagaagaggaagaagatgaa
agaggccctacaccccctgtgcgaggagcagcatcttctccagctgctgtgtcctatagc
catcagtccactgccactctgaccccttccccgcaggaggaactccagccaatgttacag
gattgtccagaggagattggtcatgtgcagcaccaaccagacagaagacgacagcctgtg
agccctcctccaccaccaagaccaatttccccgccacacacctatggctacatttctgga
ccgttggtctcagatatggatacggatgcaccagaggaggaagaagacgaagctgacatg
gaagtcgccaaaatgcaaacccgaaggcttttattacgtgggcttgagcagacccctgcc
tcaagtgttggtgacctggagagctctgtcacggggtctatgatcaacggctggggctca
gcctcagaggaggacaacatttccagtgggcgctccagtgtcagttcttccgatggctcc
tttttcacggatgctgatttcgcccaggctgttgcagcagctgcagagtatgctggtctc
aaagtggcaaggcgtcaaatgcaggacgcagctggccgccgacatcttcaggcatctcag
tgccctaggcccacaagtcctgtgtctacagacagcaacatgagtgctgctgtcatgcac
aaagccagacccaccaagaagcaaaagcaccagccaggacacctgcgccgagaagcctac
acagatgatcttccacctcctccggtgccaccacctgctataaaatcacccactgtccag
tctaagggacagctggaagtacgatctgtcatggtgccaaaactcccttccatagaagca
agaacagacagatcatcagatagaaaaggaggcagttacaaggggagagaagtactggat
ggaagacaagttgctgacttgcgaacaaatccaggtgacccaagagaagcacaggagcag
caaaatgatgggaaaggacgaggaaacaaggccacaaaacgagaccttccaccaacaaag
actcatctcatccaagaggatattctaccttactgtagacctacatttccaacctcaaat
aacccccgagatccaagttcctcaagttcaatgtcttcaagaggatcaggaagcagacaa
agagaacaagcaaatgtaggtcgaagaaatatagcagaaatgcacgtacttggaggatat
gaaagagaagaaaacaatgaagaattggaggaaacagaaagctga
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integrated database retrieval system
