Perognathus longimembris pacificus (Pacific pocket mouse): 125351618
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Entry
125351618 CDS
T08928
Symbol
Col8a1
Name
(RefSeq) collagen alpha-1(VIII) chain isoform X1
KO
K23455
collagen type VIII alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125351618 (Col8a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
125351618
NCBI-ProteinID:
XP_048202445
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Position
5:31360665..31482777
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AA seq
744 aa
AA seq
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MAVLPGPRQLLGVLLTIALSSIRFIQAGAYYGIKPLPPQIPPQLPPQIPQYQPLGQQVPH
MPLGKDGLAMGKELPHMQYGKEYPHLPQYMKEIQPAPRMGKEVVPKKGKVEIPLASLRGE
QGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKG
EIGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERGPKGPPGPPGLQGP
KGEKGFGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVAGFPGPQGPLGKPGPPGEPGPQG
PVGIPGVQGPPGIPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPK
GDRGIGGIPGALGPRGEKGPVGAPGMGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGVV
GPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGHKGLPGLPGVPGLL
GPKGEPGIPGDQGLQGPQGIPGIAGPSGPIGPPGIPGPKGEPGLPGAPGFPGVGKPGVAG
LHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGPGIDGLKPPH
AYGAKKGKNGGPYEMPAFTAELTTPFPPVGAPVKFDKLLYNGRQNYNPQTGIFTCEIPGV
YYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDRVFIQMPS
EQAAGLYAGQYVHSSFSGYLLYPM
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgctgcccggtcctcgacagcttctgggagtgctgctcaccattgccctgagc
tccatcaggttcattcaggctggtgcctattatggaatcaagccattaccacctcaaatt
cctcctcagctgccaccacaaattccacagtaccagcccttgggccaacaagtacctcac
atgcccttgggcaaagatggccttgccatgggcaaggagctgccccacatgcaatatggc
aaagagtatccacacctaccccaatatatgaaggaaattcaaccagcgccaagaatgggc
aaggaagtggtacccaagaaaggcaaagtagaaataccattagccagtttaagaggagaa
caaggtccccgcggagaacctggccctagaggaccgcctgggccccctggcttgccgggt
catgggatacctggaatcaaaggaaaaccaggaccacagggctatccaggagttggaaag
ccaggtatgcctggaatgccaggaaagccaggcgccatgggaatgcctggggcaaaaggc
gaaattggacccaaaggggaaatcgggcctatggggatcccaggaccacaaggacctccc
gggcctcatggactgcctggcattggaaagccaggtggaccaggactgccaggacaaccc
ggagcaaagggtgaacgaggacccaaaggacctccaggacctccgggccttcagggtcct
aaaggagagaaaggctttgggatgccgggtttgccgggtctcaagggccctccgggtatg
cacggccctcctggccctgttgggcttccaggagtaggaaaaccaggtgtggcaggtttc
cctgggcctcagggtcccctgggaaagccagggcctccaggagaaccaggcccacagggc
cctgttggaataccaggagttcaaggaccacctgggattcctggcgttggaaagccaggc
caagatgggatccctggccagccaggatttccaggtggcaaaggggaacaaggactgcca
gggttgccgggacccccgggtcttccaggggttgggaaaccaggctttccaggtcccaaa
ggtgaccggggcatcggaggtattcctggggctcttggaccaagaggggagaaaggccca
gtgggtgctcctggaatgggaggtcccccaggggagccaggccttcctggaatcccaggc
cccatgggccctccaggtgctattggtttccctggacccaaaggagaaggtggagttgtc
gggccacagggacccccaggtcccaaaggtgaaccagggctccaaggtttccctggaaag
cctggtttcctcggtgaagtagggcccccaggcatgaggggtttgccaggtcccatagga
cccaagggcgaagctgggcacaagggattgccaggtctccctggggttccagggctgctt
ggacctaagggagaaccaggcattccaggggatcagggtctacaggggccccaaggtata
ccaggaatcgcaggccctagtggtcctattggacctcctgggattccaggtcccaaagga
gaaccaggcctgccaggagcccctgggttcccgggggtggggaagccaggagtggctgga
cttcatggtcctccggggaagcccggtgcccttgggcctcagggtcaaccaggccttccg
gggcccccaggccccccagggcccccagggcccccagctgtgatgccccctacaccacca
ccccaaggagagtatctgccagatatgggaccaggaattgatggcttgaaacccccgcat
gcctacggggctaagaaaggaaagaatggagggccttatgaaatgcctgcatttaccgcg
gagctcaccacacctttcccaccggtgggagctccggtgaagtttgacaagctactctat
aatggcagacagaactacaacccgcagactggtatcttcacgtgtgagattcccggggtc
tactactttgcataccatgtccactgcaaggggggcaacgtgtgggttgccctgttcaag
aacaacgagcccatgatgtacacatacgacgagtacaaaaagggatttctggaccaggca
tctgggagtgcggtgctgctgctcaggcccggagaccgggtgttcatccaaatgccctcg
gaacaggctgcggggctgtacgctgggcagtatgtccattcctccttttcaggatattta
ttgtatccgatgtaa
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