Perognathus longimembris pacificus (Pacific pocket mouse): 125352046
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Entry
125352046 CDS
T08928
Symbol
Dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125352046 (Dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125352046 (Dhx36)
03012 Translation factors [BR:
plop03012
]
125352046 (Dhx36)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125352046 (Dhx36)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125352046 (Dhx36)
Translation factors [BR:
plop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125352046 (Dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
PhoH
DUF6782
NPHP3_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
125352046
NCBI-ProteinID:
XP_048203190
LinkDB
All DBs
Position
5:83572608..83603992
Genome browser
AA seq
1002 aa
AA seq
DB search
MSYDYHQSWGRDGGGRSSGGGHGGGRGGGGGRGPGGGGGRGGGRGPHPAHLKGREIGLWY
AKKQTQRNREAERQERAVVHMDERREEQIVQLLNSVQAKSEKDSESQISWFAPEDHGYGA
EVSAEKKTNSEKKVDSQEKKSVSQEKKILRIRDKPTFDRDSEYLLQGNEPDVTLDQKLLE
DLQKKKSDPRYIEMQRFREKLPSYGMQKELVTLINSHQVTVISGETGCGKTTQVTQFILD
SYIERGTGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQIRLQSRLPRKQGS
ILYCTTGIILQWLQSDSLLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNYRSDLKVILMS
ATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPEQKEHRSQFRRGFMQGH
VNRQEKEEKEAIYKERWPDYVKDLRRRYSPSTVNALEMMDDDKVDLNLIAALIRHIVLEE
EDGAILVFLPGWDNISSLHDLLMSQVMFKSDKFIIIPLHSLMPTVNQTQVFKRTPPGVRK
IVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRV
QPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAHFLSRLMDPPSNEA
VLLSVRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLS
FKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFL
SSNTLQMLHDMKGQFAEHLLGAGFVSSRSPKDPKSNINSDNEKIIKAVVCAGLYPKVAKI
RLNLGKKRKMVKVHTKSDGLVAIHPKSVNVEQTDFRYNWLIYHLKMRTSSIYLYDCTEVS
PYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDALLQEKIENPRP
VDWKDTASRDCAVLSAILDLIKTQEKAVPRSLPPRRQDAWSS
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgagctacgactaccaccagagctggggccgcgatgggggcggccgcagctcgggaggg
ggccacgggggcggccgcggcggcggcggcgggcggggccccggcggcggcggcgggcgg
ggaggcggccgcgggccgcaccccgcgcacctgaagggccgcgagatcggcctgtggtac
gcgaagaagcagactcagaggaaccgggaagccgagcggcaggagagagctgtagtgcac
atggatgaaagacgagaagaacagattgtgcagctgctgaactctgtccaagctaagagt
gagaaagactctgaatcccagatatcttggtttgctcctgaggatcatggatatggtgct
gaagtttctgctgagaaaaaaacaaactcagagaagaaagttgacagccaggaaaaaaaa
tcagtgagccaagaaaaaaagatacttagaatcagggataaacccacctttgaccgagat
tctgagtatcttttacaaggaaatgaaccagatgtaaccctcgatcaaaagttactggaa
gatttacaaaagaagaaaagtgaccctcggtatattgagatgcagcgtttcagggaaaaa
ctaccttcctatggaatgcagaaggagctagtgactttgatcaacagccatcaggtaaca
gtgataagtggcgaaactggctgtggcaaaaccacccaggtcacgcagttcatcctggat
agctacattgagcggggcacgggctctgcgtgcaggattgtgtgcacccagcctcggagg
atcagcgccatctctgttgcagagcgagtggctgcagagagggcagaatcttgtggcaat
ggtaatagcactggataccagattcgtctccagagtcgtttgccgaggaaacaaggctcc
atcttgtactgcacaacaggaatcatccttcagtggctccagtcagactcgcttttgtcc
agtgttagtcatattgtacttgatgaaattcatgaaagaaatcttcagtcggatgtttta
atgacggtcgtaaaagaccttctcaattaccgatccgacctaaaagtcattttgatgagt
gcaactttgaatgctgagaagttttcagaatactttggaaactgtccaatgatacacatt
cctggtttcactttcccggttgtggaataccttctggaggatatcattgaaaaaataagg
tatgttccagaacaaaaagaacacagatcccagtttaggagaggtttcatgcaagggcac
gtaaataggcaagaaaaagaagaaaaggaagcaatctataaggagcgctggccagattac
gtaaaggatctgcgaaggaggtattctccgagcactgtcaatgctttggaaatgatggat
gacgacaaagttgatctgaatttgatcgctgccctgatccgacacattgttttggaggaa
gaagacggagcaattctggtcttcctgcctggctgggacaacatcagcagtctgcatgat
ctcctcatgtcccaagtgatgtttaagtcagataagtttattattatccctctacattca
ctgatgcctacagtaaaccagacacaggtgtttaaaagaactcctcctggtgttcggaaa
atagtaattgctaccaatattgcagagactagcatcaccatcgatgatgtcgtgtacgtg
atagacggagggaaaattaaagagacacactttgacactcaaaacaacatcagcacgatg
tctgccgagtgggtcagcaaagcgaatgccaagcagaggaaaggccgcgctggcagagtt
caacctggccactgctatcatctgtataatggccttagagccagtcttctggatgattat
cagctaccagagatcttaagaacgcctctggaagaactttgtttgcaaataaagatctta
aggctaggtggaattgctcattttctgagtcggttaatggaccctccatcaaatgaggcg
gtgctgctctctgtgagacatctcatggagctgaacgctttggataaacaggaagaactg
acccctcttggcgtgcacttggcccgattgccagtggagccacacattgggaagatgatc
ctttttggagctcttttctgctgtttagacccagtacttacgattgcggctagtctcagc
ttcaaagacccctttgtcatcccactgggaaaagaaaagattgcagatgccagaagaaag
gaattggcaaaggaaactagaagtgaccacctgacggttgtaaatgcatttgaggggtgg
gaagaagcgaggcgtcgtgggttcagatacgaaaaggactactgctgggagtattttctg
tcttcaaacacactgcagatgctgcatgacatgaaggggcagttcgccgagcacctgctg
ggggccgggtttgtgagcagcaggagccccaaggatcccaaatccaatatcaactcagat
aatgagaagataattaaagctgtcgtctgtgcgggtttatatcctaaagttgctaaaatt
cgactaaatttgggtaaaaaaagaaaaatggtgaaagttcacaccaagtccgatggtctg
gttgcaattcaccccaagtcggtgaacgtggagcagacggacttccgctacaactggctc
atctaccacctgaagatgaggacgagcagtatctacctgtacgactgcaccgaggtctcc
ccgtactgcctgctgttcttcggcggcgacatctccatccagaaggacaacgaccaggag
accatcgccgtggacgagtggatcgtgttccagtccccggcccggatcgcgcacctggtg
aaggagctgaggaaggagctggacgcgctgctgcaggagaagatcgagaacccccgcccc
gtggactggaaggacaccgcgtcccgcgactgcgccgtgctctcggccatcctggacctg
atcaagacgcaggagaaggcggtgccccggagcctgccgccccgccgccaggacgcctgg
agcagctga
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