Perognathus longimembris pacificus (Pacific pocket mouse): 125352070
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Entry
125352070 CDS
T08928
Symbol
Vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125352070 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125352070 (Vps8)
Membrane trafficking [BR:
plop04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125352070 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
TPR_Vps41
WD40_CDC20-Fz
zf-RING_Vps41
Clathrin
zf_RING_Vps8_fungal
zf-RING_11
zf-C3H2C3
zf-RING_5
zf-RING_2
UBA_HOIP
zf-RING_UBOX
Snu56_snRNP
Beta-prop_HPS5
ANAPC4_WD40
PHD
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
125352070
NCBI-ProteinID:
XP_048203228
LinkDB
All DBs
Position
5:85216561..85408915
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AA seq
1424 aa
AA seq
DB search
MENEPDYENAEQNLCAKTTEEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEEESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGVSAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGK
DQNQALRLCLGSTSVGAQYGAVSALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
VHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
VEKLHVMDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
AGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALGLAWSFHEGKAKAVVGLSGDASK
RKAVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFSQ
MYDKLSENSVAKGVFLECLEPYILSDKLMGITPQVMKDLIVHFQDKKLMENVEALIVHMD
ITSLDIQQIVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLSDEQVV
MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASSEEEVYPYVRTL
LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSVEEKQSVWKK
AMDHIEELVALKPWKAADLVATHFSAQIETVIQKLQNQVLLFKFLRSLLDPREGIHANQE
SLQVSPSITEQFIELLCQFKPHEVTETLQVLEGYRLEETIQITQKYQLHEVTAYLLEKKG
DISGAFLIMLERLQSKLEEITHQGESTEGDSSLKDVEGAIVDTIALCQRNSHNLNQQQRE
ALWFPLLEAMMAPQKPSSSATPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSV
CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTIEIEGQMRWTCYKCSSSNKVGKLSE
NSSDVKQGKIAPTQAKTSPSYHQSKGDPPVKKAPAEPALDPQQIQALDQLCRLYRGSSRL
ALLAELAPGRGDGARPFSGGPAPHGVFHKETFGLRLAAPPAHDD
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagactatgagaatgcggaacagaacctctgtgccaagactactgaa
gaagaactgaataagtcttttaatctggaagcttcactttcaaaattctcctacatagat
ctggacaaggaactggagttcaaaaatgatctgattgatgacaaggagtttgatattcct
caagttgacactcctccaactctggaaagcatactaaacgagactgatgatgaagaggag
tcttttgttcttgaggatcctacgctgctaaacatcgatactattgattctcactcctat
gatacttcatctgtggcaagttcagatagcggtgacaggactaatttaaaaaggaaaaaa
aaactacctgattctttttcactccatggatcagttatgcgacattcacttctaaaggga
gtttctgcccagatagtgtctgcagctgacaaagtggatgctggcttgcctacagcaatt
gcagtgtccagtttgatagcagtgggtacatctcatggattggctttaatatttggaaaa
gatcagaaccaagccttgcggctctgcctgggtagcacgagcgttggagcgcagtatggc
gccgtctctgccctcagcatcaacaatgactgctccaggcttctttgtgggttcgctaaa
ggccagatcaccatgtgggatttggccagtggaaaacttctcagatcaataacagatgct
catcctccaggaacagcgatattgcacatcaagtttacagatgatccaactcttgcgatt
tgcaacgacagtggaggttctgtttttgaattgacctttaagagagtgatgggagtgagg
acctgtgaatccagatgtctcttcagtggctctaagggtgaagtgtgctgcatcgaacct
ctacattctaagcctgaattgaaggatcaccccatcacacagttttcattattggccatg
gcttccttgacaaagatacttgtcattggattgaaaccatccttgaaggtgtggatgact
tttccctatggacggatggatccctccagtgtcccgttgctggcctggcacttcgtggca
gtgcataattatgtgaaccccatgctcgcgttctgcagaggtgatgtcgtacattttctc
ctggttaagagagatgagtctggagcgatacatgtcactaagcaaaagcaccttcacctg
tactatgacctcatcaactttacttggataaattctcgcacagttgtgctcctagacagt
gtggagaagctacatgtgatggatcggcagacccaggaggaactagaaaccgtggagatc
tcagaggtgcagctggtctataacagcagccactttaagtcacttgccaccggaggaaac
gttagccaggccttggctttggttggagagaaggcttgttaccaatccatcagtagctat
gctggtcagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctgg
agagagagagtggatcatctcctgaaacaagattgtcttacagaagccttgggtctcgca
tggtcttttcatgaaggaaaagccaaagcagtggtggggctctcaggagatgccagtaaa
cgaaaggctgttgttgctgatcggatggttgaaatcctattccattatgcagacagagct
ctgaaaaagtgcccagaccaaggaaagattcaagtaatggagcagcatttccaggatacc
gtgccggtcatcgttgattactgcctactgctgcagcggaaggatcttttatttagccaa
atgtatgacaagttaagcgagaattcagtggccaagggagtatttttggagtgccttgag
ccatatattttgagtgataaattgatggggatcacaccccaggtcatgaaggacttaatt
gttcatttccaagataaaaagttaatggaaaatgtggaggccctcattgtacatatggat
atcaccagcctagacattcagcagatagtcctcatgtgctgggaaaatcgtctctatgat
gctatgatctatgtctacaacagaggcatgaatgaatttattagtcccatggagaaactt
ttcagagtcattgctcctcctctgaatgcaggaaaaacgctatcagatgagcaagttgtc
atgggcaataagcttcttgtatatattagttgttgtctggcaggtcgcgcctatcccctg
ggtgacatccctgaagatcttgtccccttggttaaaaaccaggtttttgaatttctgatt
cgcctgcattctgcagaagcttcttctgaggaagaagtctatccttatgtccggactttg
ctacattttgacacaagggaatttctgaacgtattggcactgacctttgaagattttaaa
aatgacaaacaagctgtggaataccagcagcgaattgtggatattttgttgaaagttatg
gtggaaaattcggatttcactccctcgcaagtagggtgtctctttactttcctggctcgg
cagcttgcaaagcctgacaataccttgtttgtgaacagaaccctctttgatcaggttctg
gaattcctctgtagtcccgatgatgactccaggcattctgagagacagcaggtcctttta
gaattgctgcaggctggaggaatagttcagtttgaagagagccgactcatccgcatggca
gaaaaagctgagttctatcagatttgtgaatttatgtatgaacgtgaacaccaatatgac
aaaattattgattgctacttgcgtgacccactgagagaggaagaagtctttaattacatt
cacaacatcttatccattcctggccacagtgtagaggagaagcagtctgtgtggaagaaa
gcaatggatcatattgaggaacttgtggctctgaagccctggaaggctgcagatttggtt
gcaacccacttttctgcacagattgaaaccgtcattcaaaaacttcagaaccaagtttta
cttttcaaatttttgaggagtcttcttgacccaagggaaggtattcatgcaaatcaagaa
tcactgcaagtatctcccagtattacggagcagttcattgagctactgtgtcagtttaag
ccacacgaagttacagagacactgcaagtccttgagggctaccggctggaagaaactatt
cagattactcaaaaatatcagctccatgaagtcactgcttatctattggaaaagaaagga
gatattagtggtgctttcttgataatgctagagagactacaaagcaaacttgaggagata
acacatcaaggtgaaagtactgaaggagactcctcactgaaggatgttgaaggcgccatt
gtagacaccattgcactttgccaaagaaattcccataatttgaatcagcagcaacgagag
gcactctggtttccactattggaggcaatgatggccccccagaagccgtccagctcagcc
acccctcacctccactccgaagctctgaaatctttgaccatgcaagttctcaatagcatg
gcggcatttattgctcttccttcaatcttgcaaagaatcttacaggacccagtttatgga
aaaggaaaacttggagaaatccagggacttattctgggaatgttagacacctttaactat
gaacaaactctactagaaacaacaaccagccttctaaaccaagatctccactggtcactg
tgcaacctgagagcttcagtcacgagaggactgaatcctaaacaggattattgctctgta
tgcctgcagcagtacaagagacgccaggaaatggctgatgagattattgtcttcagctgt
ggccatttgtatcattcattctgtctacaaaacaaagaatgcaccatagaaatcgagggc
caaatgagatggacgtgctacaaatgcagctcaagtaacaaagtaggaaaactcagtgaa
aattcatctgacgttaaacaaggaaagatagccccaacacaggcgaagacgtctccctca
tatcatcagtccaaaggggaccctcctgtcaagaaggcgcccgcggagcccgcgctggat
ccgcagcaaatccaggctctggaccagctctgccgcctctaccggggcagctccaggctg
gccctcctcgccgagctcgccccgggccgcggcgacggcgccaggcccttcagcggcggc
cccgcgccccacggcgtcttccacaaggagaccttcggcctgcgcctcgccgccccgccc
gcccacgacgactga
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