Perognathus longimembris pacificus (Pacific pocket mouse): 125352075
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Entry
125352075 CDS
T08928
Name
(RefSeq) synphilin-1 isoform X1
KO
K04558
synphilin-1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop05012
Parkinson disease
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
125352075
05022 Pathways of neurodegeneration - multiple diseases
125352075
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Gene cluster
GFIT
Motif
Pfam:
SNCAIP_SNCA_bd
Ank_2
Ank_4
Ank
Ank_5
Ank_3
Motif
Other DBs
NCBI-GeneID:
125352075
NCBI-ProteinID:
XP_048203236
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Position
5:86853505..86915651
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AA seq
934 aa
AA seq
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MEAPEYLDLDEIDFSDDISYSVTSLKTIPELCRRCDSQTEDRPVSSSGWNCGVSTLTANT
QKPTGIADVYSKFRPVKRVSPLKHQPETLESNENEDGENQEADCRKGGEPGRPERLGAED
GVRGVAGKGGEPEHYDLDMDEILDVPYIKSAPPLAAFAKAASEKRVLGLCAAINGLAGKA
CAAGSGESSPPSATPCCVLSPVKSPLSRRAPAGLRDRRQPSAGDAAGSPPLRSCGSGCEP
ESQSRDFSHGPSSDPQGRKTEKTAPECQLRSFHPPPSTAEPRPEERLHGLAWPGPQGPEE
RTEHLKKVKSILNIVKEGQISLLPHLAADDLDTIHDENGNNLLHLAAARGHAECLQHLTS
LMGEDGLSERNADQLTPAGLAVKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCHG
QEKILLWLLQFMQEQGISLDEVDQEGNSAVHAASRHGHLGCIQTLVEYGANVTAQNRAGE
KPSQSAERRGHTLCARYLVVVETCMSLASQVVKLTKQLKEQTVERVTLQKQLQQLLEAQK
PEGRSLPSSPSSPLSPASRKPQWKASDAEDEAAARSRPALLEGPQVLGSPAGAASRARAK
AKDDDPDKVLRQLLGKEMSEQVCAREKLTLEFQDAQAPSGSAKKTPPEKRELKLARLRQL
MQRSLSESDTDSSHSEDPRAAPARKAESAEPGDGAEGPPLAAKKHAPASSGRRFPFGAKA
PRPAHGHSPSPTSEGSEPDGEPPQPGPDSPAAPKAATSPKSALKSPSSKRRTSQNSKLRV
TFEEPLVQGEQPDPEPGGDRDREKGRTVPPRAPAGSEPGEPPRRPFGTFRSIMETLSGNQ
NNNNNCPAAHQLKTSTLPSTSLGRKTPDKGNPAGPASSAKNKAEMSSSCFNLSSNTLVEE
YLRNSARHNDTCRKMKKSNSIKHIAEPESKELFL
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggaagctcctgaatacctcgatttggatgagatcgactttagtgatgacatatcttac
tcagtcacatcactcaagaccatcccagagctctgccggagatgtgattcccaaaccgaa
gacagaccagtgtctagctctggctggaattgtggcgtctcgaccctcaccgcaaacacg
cagaagcccacgggcatcgccgacgtgtacagcaagttccgccccgtgaagcgcgtgtcc
cctctgaaacaccagcccgagactctggagagcaacgagaacgaagacggcgagaaccag
gaagccgactgccggaaagggggcgagcccgggcggccggagcggctcggcgccgaggat
ggggtcaggggcgtggccggcaagggcggcgagccggagcactacgacctggacatggac
gagatcctcgacgtgccctacatcaagtctgccccgccgctggccgccttcgccaaggcc
gcttcagagaagagggttctggggctgtgcgccgccatcaacggcctggccggcaaagcc
tgcgccgcgggaagcggggagagctcgccccccagcgccaccccgtgctgcgtcctttcc
cccgtgaagagcccgctctccagaagagcgcccgctgggctccgggacagacgccagccc
tccgcgggagacgccgccggctcgcctcccctgcgcagctgcggctccgggtgtgagccc
gagagccagagcagagacttctcacacgggccctccagcgacccccagggccgcaagacg
gaaaagacagcgcccgagtgccagctccgctcgtttcacccgccaccctccaccgccgag
cccaggccggaagagcggctccacggcctggcctggcccggcccccagggccccgaagaa
aggaccgagcacttgaagaaagtcaagagcatcctgaacatcgtgaaagagggacagata
tcgctcctgcctcacctcgccgccgacgacctggacaccatccacgacgagaacggcaac
aacctgctgcacctggcggcggcgcggggccacgcggagtgtctgcagcacctcacgtct
ctcatgggggaggacggcctcagcgagcgcaacgcggaccagctgacgcccgcgggcctg
gccgtcaagaatggtcagctggagtgtgtacgctggatggtgagcgaaacagaagccatc
gcagagttgagttgttccaaggacttcccaagcctcattcattacgctggttgccacggc
caggagaagattcttctgtggcttctgcagttcatgcaagagcaaggcatctccctggac
gaggtggaccaggagggcaacagcgccgtccacgcggcctcccggcacggccacctcggc
tgcatccagacgctggtggagtacggcgccaacgtgaccgcgcagaaccgcgccggcgag
aagccgtcccagagcgccgagcgccgcggacacacgctctgcgcccgctacctggtggtg
gtggagacctgcatgtcgctcgcctcgcaggtggtgaagctcaccaagcagctcaaggag
cagaccgtggagcgggtgacgctgcagaaacaactccagcagctcctcgaggcccagaaa
ccagagggcagatcgcttccttcctcacccagttccccgctttcgccagcttccaggaag
ccccagtggaaagcgtcagacgcggaggacgaggcggcggccaggagcagacccgccctc
ctcgaggggcctcaggttctcgggagcccggcgggggcggccagccgggccagggccaaa
gcaaaggacgacgatccggacaaggtcctcagacagctgctggggaaggagatgtcggag
caggtgtgcgcgcgggagaagctgaccctggagttccaggacgcccaggcgccctccggc
agcgccaagaagacccccccggagaagagggagctgaagctcgcccgactgcggcagctc
atgcagcggtcgctgagcgagtcggacacggactccagccactcggaggaccccagggcc
gcgcccgccaggaaggcggagagcgccgagcccggagacggcgccgagggcccgccgctc
gccgcgaagaagcacgccccggcgtcctcggggcgcaggttccccttcggcgccaaggcc
cccagaccggcccacggccacagcccctcgcccacctcggagggcagcgagcccgacggg
gagcccccccagcccggtcccgacagccccgcggcccccaaggcggccacgagccccaag
agcgcgctcaagtccccgtcctccaaacgcaggacctcgcagaactcgaagctcagagtc
accttcgaggagccgctggtgcagggggagcagcccgacccggagccgggcggagaccgg
gacagggagaagggcaggaccgtgccgccgcgggccccggcggggagcgagcccggggaa
ccgcccaggaggcctttcggaaccttccggtccatcatggagacgctcagcggcaaccag
aacaacaacaacaactgcccggcggcccaccagctcaagacctcgactctgccctcgacc
tcgctcgggaggaagacgccggacaagggaaaccccgcgggccccgccagcagcgcgaag
aacaaggccgagatgtccagcagctgcttcaatctttcttctaacacactggttgaagag
tatctgcgtaactctgcacggcataatgacacctgtagaaaaatgaagaaatccaacagc
atcaagcacattgctgagccagagtccaaagaactcttcttgtaa
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