Perognathus longimembris pacificus (Pacific pocket mouse): 125352710
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Entry
125352710 CDS
T08928
Symbol
Vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125352710 (Vps52)
Membrane trafficking [BR:
plop04131
]
Protein recycling
Others
EARP complex
125352710 (Vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
125352710 (Vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
Dor1
Sec3_C-term
COG6_N
ATG16
Motif
Other DBs
NCBI-GeneID:
125352710
NCBI-ProteinID:
XP_048203945
LinkDB
All DBs
Position
6:13061913..13072006
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AA seq
723 aa
AA seq
DB search
MAAAETMAAAARELVLRAGTSDMEEEEGPLGGGPGLQEPLQLGELDITSDEFILDEVDVH
IQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACD
AVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSA
LVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRVKAVTKIRE
FILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGNERATAKEIRDEYVETLSKIYLSYY
RSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNTIFTLGTRGAVISPTELE
APILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGPAAHDLFHAVMG
RTLNMTLKHLESYLTDCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRF
ELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQ
VEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEF
IEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDV
MRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHK
PNF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgcggagaccatggcggctgctgcccgcgagctggtgttgagggctgggacc
tcagatatggaggaggaagagggcccgctggggggtggtcctgggctccaagagccactg
caacttggagagttggacatcacctctgatgagttcatcctggatgaagtggatgttcac
attcaggcaaatctggaggatgagttagtaaaagaagctcttaaaacgggtgtggatctc
cgtcactattcaaagcaggttgagctggagctacagcaaattgaacagaaatccattcgg
gattatatccaagagagtgagaacatagcatctctgcacaaccagatcacagcctgtgat
gctgtcctggagcgcatggagcagatgctgggagcttttcagagtgacctcagctccatc
agctctgagatccggacgctgcaggagcagtctggagccatgaatattcgacttcgaaac
cgccaggcagttcgggggaagcttggagagcttgttgatggtctggtggtaccctctgct
ctggtcacggcaattctagaggctccagtgacagagcccaggttcttggagcagctgcag
gagctggatgctaaggcagccgcagtcagagagcaggaagctagaggcacagcagcctgc
gcggacgtcagaggtgtgctggaccggctccgggtcaaggcagtgacaaagatccgagag
ttcatcctccagaagatttattccttcaggaaaccaatgaccaactatcagatcccccag
actgctctgctgaagtacaggttcttctatcagttcctgctgggcaatgaacgagcaaca
gcaaaggagatcagggatgagtatgtggagacactaagcaagatctacctgtcttactac
cgctcttacctggggcggctcatgaaagtgcagtatgaggaagttgctgagaaagatgac
ctaatgggtgtggaagatacagccaaaaaaggattcttctcgaagccctccctccgcagc
agaaacactatcttcaccctgggaacccgaggcgctgtcatctcccccactgaacttgag
gcccccatcctggtgccccacacagcccagcgtggagagcagaggtatccatttgaggcc
ctcttccgcagtcagcactacgccctcctagacaattcctgccgtgaatatcttttcatc
tgtgaattttttgtggtgtctggcccagctgctcatgatctcttccatgctgtcatgggc
cgaacactcaacatgaccctgaaacacctggagtcctatctgactgactgctatgacgcc
attgctgtcttcctctgtatccacatcgttctccgattccgcaatattgcagccaagagg
gatgtccctgctctggacaggtactgggaacaggtgcttgccttgctgtggccacggttt
gagctgatcctggagatgaatgtccagagtgtccgaagcactgacccgcagcgccttggg
ggtttggatactcggccccactatatcacacggcgatacgcggagttctcttctgctctc
gtcagcatcaaccagacaattcccaatgaacgcaccatgcagctgctggggcagctacag
gtggaggtggagaatttcgtcctccgagtggccgctgagttctcctccaggaaggagcag
cttgtgtttctcatcaacaattacgacatgatgctgggggtgctgatggagcgggctgca
gatgacagcaaagaggttgagagcttccagcagctgctcaatgcgcggacgcaggaattc
attgaagagctgctctctcccccttttgggggtctggtggcatttgtgaaggaagctgag
gctttgattgagcgtggacaggctgagcgacttcgaggggaagaagcccgagtgactcag
ctgatccgtggctttggcagttcctggaaatcatcggtggagtctctgagtcaggatgta
atgcgcagtttcaccaacttcagaaatggaaccagtatcatccagggagcattgacccag
ctgatccagctttatcatcgcttccaccgggtgctgtcccagccgcagctgcgggccctt
ccggcccgggcggagctcatcaacatccaccacctgatggtggagctcaagaagcacaag
cccaacttctga
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