KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125352750
Entry
125352750         CDS       T08928                                 
Symbol
Mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:plop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plop03400]
    125352750 (Mdc1)
DNA repair and recombination proteins [BR:plop03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    125352750 (Mdc1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 125352750
NCBI-ProteinID: XP_048203997
LinkDB
Position
6:14503474..14521915
AA seq 1750 aa
MEDTQTIDWDAEEEEETEQSRESLEHSSEPVGQLRIFSGTHGPEKDFPLYLGKNMVGRSP
ECAVALPFPSISKQHAVIEILAWNKAPILQDCGSLNGTQILRPPKVLSPGVSHRLRDKEL
ILFADFPCQYHHLDVPQPFVPRGPLTVEETPRVQGGTQPSRLLVEDSEEEVDFVSERCEV
KESVTTSSPLPTMVPESDEEGPSPAPGGSGTSFPFNLDSDTDEEKDQQPAIGKTSLVSRK
DATAEAELPEASGAPTTVRLVKAQSTVENDQYTKIKKVVGNGEILVRSQPPEDSDTDMDE
ESRSSGRPADVHWERAQASGFVDSDTDMEEEGIPATPAIVPMKRRQIFHGTDTKDPGAPG
VAHVQESPTGSDTDVEEGEAPLAVPARRSQTSVVINSDTDDEEEVSAALTLACLKENGSV
LWNRGPGVGEDRVQSAVLQEQSHIDSGRDSDTDMEDEWLPVEKKETVPSGHTDKNGALVT
ADSEKGQPSFRDHDVGEKTDVSSSGIHLQRSQTSSSAIVGNNTEMEEEVSSGSVVTNQEL
REGTNQTDVEAGRSLVKLPVVPLEEDGLPDENWDTDVNEDRSSVVADVKKNQHLAKENPR
AVDVLEQEQSLEVGTQSGSPVAQVEQVLHLVEPTESEREGAQTPTGRGKKALKGRTKDSK
DNYDDPEDLDLQATQCFVEKENQNMEAVQKTEDEPTQAFTFPLPQEPSPSHCSSQTPGAP
DEPWEVLATQPFCLREVEVSEPQPTAAHFEVHGSCQSPPRTVSREQHPESPVHTEPLEIE
DKGMQTVEKEMDTPKGTPEPVQPERCLSEREIKEWPSDREREDVTMENELTREIQDREQN
QVLAGDTQTQESDTKVKSMSPKRVRESLELEMETSKEIQEKEEKQALTREILERQEDKPV
PKRKCKQTGLEVTLSREEADKGSQNQKGQATSPTPESRVEAQCLQGLTSGPVVSESQPGG
RRKALVSPRRQQRGHSIPKMPAAKKDSRGDPESPDVCLPVSEASVPPQSSGHLAPPPFLP
PPPSSEAPILSKRHSGSQEAPETPLSSEPFPSEHTVRPRRSSRMTPSPLSTVPTTPIDQT
SPPRPSSQATRTRTRRSSVKTPEPLVPIASELQSSTSTEPISRATRGRALRSSVRTPGPI
VPTGLELQSSTSTVQLATPKPTSHTTRGKTRRSSVQTPGPVVPTDPELPPSTSTIQPVTP
ETVASHATRGKTRRSSVQTPGPVAPTDLGLQPSTSSVQPATPKTASEATQDRTHGSSVES
PDAVVSIGSKFLPSPSTEQRPVTPAPTSRATRGRKNRSSVKTPEPVVPNELQPSTSVQPV
TPKPTSRTTRSRACKSSIGTSDPEGPTSTDQPVTPETVTHSRTLNSSSLSTTPVLATSEA
QPAPLEQAQATCIGEQGAAEKHGSFTSINHKPCSVLSEPKSRSSNNQRPRARKAVKSFGT
IPEHSQLPEALTHAAQNQDIKAESTSRFTPEPLPKSSQSRKRPSVSKGSPPLKKRPQKTV
FPKEEEDTVERPGKEEDVVIPGPSKRKRDQAKEGPKGTQSRSLRGAKPSQGSAPRVLFTG
VLDARGERAVLALGGTLANSVTEASHLVTDRIRRTVKFLCALGKGIPILSLDWLYQSRKA
GHFLPPDKYLVTDPEQEKNFGFSLRDALSRARERRLLEGYEIHVTPGVQPPPPQMGEIIS
SCGGTILSNMPRLYKPQRVVITCPQDFPRCSVPSRVGLPLLSSEFLLTGVLKQEAKPEDF
AFSCVEKSST
NT seq 5253 nt   +upstreamnt  +downstreamnt
atggaagacacccagactattgactgggatgctgaagaagaggaggagaccgagcaatcc
agggaatccttggagcatagctcagaacctgtagggcaactgagaattttcagtggcaca
catggaccagaaaaagattttccactataccttgggaagaatatggtaggccgaagccct
gagtgtgcagtggccctgccctttccatccatctccaaacaacatgcagtgattgagatt
ttggcctggaacaaagcacccatccttcaggattgtggaagcctcaatggtactcaaatt
ctgaggccacctaaagtcctgagtcctggggtgagtcatcgtctgagagacaaggaattg
attctgtttgctgactttccatgccagtaccatcacctggatgtccctcagccctttgtc
ccccggggccctctaacggtagaggagacccccagggtgcagggaggaactcagccctct
cggcttttggttgaggactcagaggaagaagtagattttgtgtctgaaaggtgtgaggtg
aaagaatcagtgaccacatcttcccctttgccaacaatggttccagaaagtgatgaagag
ggcccttccccagcccctggtggctctgggacatcttttcctttcaacttggacagtgac
acagatgaggaaaaagaccaacaaccagcaatagggaagacctctttagtttcaaggaaa
gatgccactgcagaggcagagctgcctgaagccagtggagctccaactactgtcagacta
gtaaaggctcagtctacagtagagaatgaccagtacacaaaaatcaagaaggttgtggga
aacggagagattctggtgaggagtcagcctcctgaggacagtgacacagatatggatgaa
gaaagccggtcttctggcaggccagctgatgtccattgggaaagggctcaggcttctggc
tttgtggacagtgatactgacatggaagaagagggaattcctgccaccccagctatagtt
cctatgaagaggagacagatcttccatggaactgatacaaaggatcctggagcacctggt
gtggcacacgtgcaggagagcccaactggtagtgatacagatgtggaggagggtgaagct
ccactggctgtccctgcaaggagaagccaaacctctgttgtgatcaacagtgatacagat
gatgaggaagaagtctcagcagcactcacattggcatgtctgaaagagaatggatctgtt
ttatggaacagaggcccaggtgtgggagaggacagagtacaatctgcagtccttcaagag
caaagccacattgactctggaagagacagtgacacagacatggaagacgaatggctccca
gtggaaaagaaagaaactgtccctagtggtcacacagacaagaatggggctcttgttaca
gcagattcagaaaaaggacaaccttcttttagggaccatgatgtaggtgagaaaacagat
gtgagctcatctgggatccacctacagagaagccagacctcctcctctgccatagtgggc
aacaatacagaaatggaggaagaagtttcatcagggtcagttgttacaaatcaggagctt
agggagggtacaaatcaaacagatgtggaagcaggaaggagcctagtaaagctgcctgtg
gtgcctctagaggaagatggacttcctgatgaaaactgggatacagatgtgaatgaagac
cggtcctcagtagtggcagatgtgaaaaagaaccagcatttggcaaaagaaaatcctaga
gctgtagatgtccttgaacaggagcaatctcttgaggtaggcacccaaagcggatctcct
gtggcacaagtggaacaggtattacacctagtggagcccactgaatcagagagagaggga
gcccagaccccaacaggaaggggaaaaaaagcacttaagggcagaaccaaggactccaaa
gacaactacgatgatcctgaagatctggaccttcaagctactcagtgctttgtggagaag
gagaatcagaacatggaagcagtccagaagacggaggatgaacccacccaggcctttaca
tttcccctaccccaagagcccagcccttcccattgcagctctcagaccccaggtgctccc
gatgagccttgggaagtcttggctactcagccattctgtctgagagaggttgaggtctct
gagccccagcccactgctgcccattttgaggttcatggatcttgccaatctccaccaagg
acagtgtcaagagaacagcacccagagagcccagttcacacagagccgttggagattgaa
gacaaagggatgcaaactgtggaaaaagaaatggacacaccaaaaggaacaccagagcct
gtgcagcctgagagatgtctgtcagagagggaaatcaaagaatggccatcagacagagag
agagaagatgtgaccatggaaaatgaattaactagagagatacaggacagagagcaaaac
caagtgttagctggagatactcagacacaagagtctgacacaaaggtgaaaagtatgagt
cctaaaagggttagagagagtttggaattagaaatggagacatccaaggaaatacaagaa
aaggaggagaagcaggcccttacaagagaaatacttgagagacaggaagataagccagtg
ccaaagagaaaatgtaagcaaactgggttagaagtaactctaagtagagaggaggcagat
aaagggagccagaaccagaaagggcaagccaccagtccaacaccggagtctagagtggaa
gcacagtgccttcagggacttacttcaggcccagtagtgtctgagagccagccaggtggc
cgaaggaaagccctagtgagccccagaaggcagcaaagaggccactccattcccaagatg
ccagctgctaagaaggattcaagaggtgatccagaatccccagatgtttgcctgcctgta
tctgaagcttcagttccaccacagagttcaggacatcttgcacctccgccttttcttcct
cctcctccctcttctgaggcacccatccttagcaaaaggcacagtgggagtcaggaagct
ccagaaacccccttgtcctcagagccttttccctcagagcatactgttaggcctcgacgg
tcctctaggatgacaccctctccactctctactgttcctaccacccccatagaccagacc
agcccccccaggccttcatctcaggcaactcggactaggacacgtagatcctctgtcaag
actcctgaaccacttgtccccatagcttctgaactccagtcttccacctccactgagcct
atatctcgtgccactcggggtagagcacttagatcctctgtcaggacccctggaccaatt
gttcccacaggccttgaactccagtcttctacctccacagtccagcttgccacccccaag
cctacatctcacaccactcgaggcaagacacgtaggtcctctgtccagactcctggacca
gttgtccccacagaccctgaactcccgccttccacttccaccattcagcctgtcaccccc
gagactgtggcatctcatgccactcgaggaaagacacgtaggtcctctgtccagactcct
ggaccagtggctcccacagaccttggactccagccttctacttcctcagtccagcctgcc
acccccaagactgcatctgaagccactcaagataggacacatgggtcctctgttgagagc
cctgatgcagttgtctccataggctccaaattcctaccttccccctccacagagcagcgt
cctgtcacccctgcgcccacatctcgagccactaggggtcggaaaaataggtcctctgtc
aaaaccccagaaccagtcgtccctaatgaactccagccttccacctctgttcagcctgtc
acccccaagcccacatctcggactactaggagcagggcgtgtaagtcctccattgggact
tctgatcctgagggccctacctccacagaccagcctgtcacccctgagactgtaactcat
agcaggactctaaattcttcatccctaagtactaccccagttcttgccacctctgaagcc
cagcctgctcccctagaacaggctcaagccacctgcatcggggaacagggtgctgctgaa
aaacatggctctttcacaagtattaaccacaagccttgctccgtactctctgaacctaaa
tcccgatcctcaaataaccaaagaccaagagctcggaaagcagttaagtcttttgggacc
attcctgagcattcccagcttcctgaggcactcactcacgctgcccagaaccaagacata
aaagcagaaagtacatctagattcaccccagagcctctgcctaagtcttctcaaagccgc
aagaggccttctgtttctaagggctcacccccacttaaaaaacggccccagaagacagtg
tttcccaaggaggaggaagatactgtggagaggcccggaaaggaagaggatgtcgtgatc
ccaggaccaagcaagaggaagagagaccaggcaaaggaggggcccaaaggaacacagagc
cgcagcctcagaggggccaaacctagtcaaggatcagcccccagagtactcttcacagga
gtcttggatgctcgtggggagcgagcagtgctggcactcgggggaactctggccaactcc
gtgacagaggcctcccacctggtcaccgaccgaatccgcaggactgttaagttcttgtgt
gctctgggaaaagggatccctatcctctctcttgactggctttatcagtctcgcaaggct
ggtcacttcttgcccccagataagtatctggtgactgaccctgagcaggaaaagaacttc
ggcttcagccttcgagatgcactcagccgggctcgggagcgaaggctgctggagggttat
gagattcatgtgacccctggagtccagccgccgccacctcagatgggagagataattagc
tcgtgtggtggcacgatcctgtccaacatgccccggctctataagcctcaaagagttgtg
atcacatgccctcaggatttccctcgttgctccgtcccatctcgggtggggctgcccctt
ctctcttctgagttcctgctgactggagttctgaagcaagaagccaagccagaggacttt
gccttctcctgtgtagaaaagtcatctacctga

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