Perognathus longimembris pacificus (Pacific pocket mouse): 125352758
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Entry
125352758 CDS
T08928
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125352758 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125352758 (Dhx16)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125352758 (Dhx16)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125352758 (Dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
nSTAND3
SRP54
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125352758
NCBI-ProteinID:
XP_048204052
LinkDB
All DBs
Position
6:14547792..14561963
Genome browser
AA seq
1043 aa
AA seq
DB search
MATPAELERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFAHRLWNRVPRKPVVEKPSRVAEREARALIEKNRSYKLLEDSEESSEETVSRGKSSLQK
KRKKRKHLRKKHYDEEEEEEDISETGKRKKGEDKEQTKKAESEDEWERTERERLQDLEER
DAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKIAEEDRKAMVPELRKKSRREYLAKR
EREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNRY
HMPKETRGQPARAVDLVEEESSAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLE
EEETIEFVRATQLQGDEEPSAPPPSAQAQQKESIQAVRRSLPVFPFREELLAAIANHQVL
IIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVG
YSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKD
VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR
IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKAS
ANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLVHF
DFLDPPPYETLLLALEQLYALGALNHLGELTMTGRKMAELPVDPMLSKMILASEKYSCSE
EILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWC
YENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHIARLTRSG
YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESNWLLEVAPHYYKA
KEVEDPHTKKMPKKIGKTREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggagctggagcgctgggtgcaggaggagctgcactcagtgctgggg
ctgagcgagcggcacgtcgcgcagttcctcatcgggacggcgcagcgctgcgcctcggcc
gaggagttcgtgcagcgcctgcgggacaccgacaccctagacctcagcgggcccgcgcgg
gacttcgcccaccggctgtggaacagggtaccacggaagccagtggtagaaaagccatct
cgggtggcagagcgagaggctcgagccctgatagagaaaaaccgatcttacaagttgttg
gaagatagtgaagaaagcagtgaggaaactgtgagtaggggtaagagcagcctccagaaa
aagcgtaaaaaacggaaacacctcaggaagaaacactatgatgaggaggaagaagaggaa
gacatttctgaaacagggaaaaggaagaaaggggaggataaagagcagacaaagaaagca
gaatcggaggatgagtgggagcggacagagcgagaacgtcttcaggacctggaggaacgt
gatgcctttgcagagcgagttcggcagcgggacaaggatcggactcgcaatgtcctagag
cgctcagacaaaaaggcttatgaagaggctcagaagcgcctcaagatagctgaggaagac
cggaaagccatggtccctgagctgcggaagaaatcccgcagggagtatctggccaagcgg
gagcgggagaagctggaggacctggaggcggagctagctgatgaagagttcctcttcgga
gatgtggagctcagccgtcatgaacgccgagagctcaaatacaagcggcgagtgagggat
ctggcccgggaataccgggcagccggtgagcaggagaagctggaggccaccaaccgctac
cacatgcccaaggagacgcggggacagcctgctcgagctgtagacctagtggaagaggaa
tcgagtgctcctggggaagagcagcggcgatgggaggaggcccggcttggggcagcatcc
ctaaaatttggggctcgagatgctgcctcccaggagccaaagtatcagctagtgctggag
gaggaggagaccattgagtttgttcgtgccactcagctccagggtgatgaggagccatca
gctccccctccatcagcacaggcccagcagaaagagtccatccaggctgtccgtcgcagc
ctccctgtgttcccgttccgggaagagctcctggctgccattgccaatcaccaggtcctc
atcattgaaggcgagaccggctctgggaagaccacccagatcccacagtacctgtttgag
gagggctacacaaaaaagggcatgaagatcgcctgcacacagccccggagagtggcagcc
atgagcgtggccgccagagtagcccgggagatgggcgtaaagcttgggaatgaggttggc
tacagcatccgctttgaggactgcacatcggagagaacagtcctccgctacatgacagac
gggatgcttctgcgggagttcctttctgaacccgacctagccagctacagtgtggtgatg
gtggatgaagctcatgaacggaccctgcacacagacattctctttgggctgatcaaggac
gtggctcgcttccggcctgagctcaaggtcctggtagcttctgccacactggacactgcc
cgcttttccaccttctttgatgatgcccctgtctttcgaatccctggccgcaggtttcca
gttgacatcttctacaccaaggctccagaggctgactacctggaagcctgtgttgtgtct
gtgctgcagatccacgtgacgcagccccccggggacattctggtgttcctgacgggacag
gaggagattgaggctgcttgtgagatgctccaggatcgctgccgccgactgggctccaaa
attcgggagctcctggtgctgcccatttatgccaacctcccctccgacatgcaggctcgc
atcttccagcccacacctcctggggcccgaaaagtggttgtggctacgaacattgcagag
acatcgctcaccattgagggcatcatttacgttctggatccagggttctgtaagcagaag
agctacaatccccgcacaggcatggagtcgctcactgtcacaccctgcagcaaggcctca
gccaatcagcgggctgggcgagcaggtcgagtggctgcagggaagtgcttccgcctgtac
acagcctgggcctatcagcatgagctggaagagaccacagtgcctgagatccagaggacc
agcctgggcaatgtggtgctgctgctcaagagcttagggatccatgacctggtgcacttt
gacttcctggatcctccaccctatgagaccctgctgctggccttggaacagctgtatgcc
ctaggagccctcaatcatcttggggagctcaccatgactggtcgaaagatggcagagctg
cccgtggaccccatgctatctaaaatgatcttggcctctgagaagtacagctgctcagag
gagatcctgacggtggctgccatgctctctgtcaacaactccatcttctaccggcctaag
gacaaggttgtccatgctgacaatgcccgtgtcaacttcttcctccctggtggggaccac
ctggttctgctcaacgtgtacacacagtgggctgagagtggctactcttcccaatggtgc
tatgagaacttcgtgcagttcagatccatgcgccgagcccgggatgtgcgggaacagctg
gaagggctcctggagcgtgtggaagtcggtctgagctcctgccagggtgactacatccgg
gtccgaaaggccatcactgctggttacttttaccacatagcacggctgacgcggagtggc
taccgcacagtgaagcagcagcagacagtcttcatccaccccaactcctccctctttgag
cagcagccacgctggttgctctaccacgaacttgtcttgaccaccaaggagtttatgaga
caggtgttggagattgaaagcaactggcttttggaagtggctccccactactataaagcc
aaggaggtagaagatccccatacaaagaaaatgcccaaaaaaataggcaagacacgagaa
gagctggggtag
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integrated database retrieval system
