Perognathus longimembris pacificus (Pacific pocket mouse): 125352782
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Entry
125352782 CDS
T08928
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
plop03015
mRNA surveillance pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125352782 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
125352782 (Ddx39b)
03015 mRNA surveillance pathway
125352782 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125352782 (Ddx39b)
03041 Spliceosome [BR:
plop03041
]
125352782 (Ddx39b)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125352782 (Ddx39b)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125352782 (Ddx39b)
Spliceosome [BR:
plop03041
]
Complex C
Other components
EJC/TREX
125352782 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125352782 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125352782
NCBI-ProteinID:
XP_048204103
LinkDB
All DBs
Position
6:14139857..14152197
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagaggatgaggtggaaacc
gcagctgggggggatggagctgaagcccccgccaagaaagatgtcaagggctcttatgtc
tccatccacagctctggctttcgagacttcttgctcaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccatctgaagttcagcatgagtgcatccctcaagccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagttggagccagttaccggacaggtgtctgtgctggtgatgtgt
cacactagggagttggcttttcagataagcaaggaatatgaacgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgtatcttagccctggct
cgtaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatatttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccga
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttttagatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
atcgccctcgcccagcttctggtggagcagaacttccccgccattgccatccaccgtggc
atgccccaggaagagcggctttctcggtatcagcagtttaaagatttccaacggcggatt
cttgtggccaccaatctgtttggccgaggcatggacattgagcgggtgaacatcgccttc
aactacgacatgcctgaggattctgacacatacctgcatcgggtggcgagagcaggccgg
tttggcaccaagggcttagccatcacgtttgtgtcagatgagaatgatgccaagattctc
aatgatgtgcaggaccgctttgaggtcaatattagtgagttgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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