Perognathus longimembris pacificus (Pacific pocket mouse): 125352944
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Entry
125352944 CDS
T08928
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM38-like
KO
K12014
tripartite motif-containing protein 38 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125352944
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125352944
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125352944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_2
zf-C3HC4_3
ANCHR-like_BBOX
zf-RING_5
zf-Nse
U-box
Trm112p
zf-Tbcl_FmdE
PsbQ
AATF-Che1
Motif
Other DBs
NCBI-GeneID:
125352944
NCBI-ProteinID:
XP_048204289
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All DBs
Position
6:complement(17475641..17581382)
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AA seq
465 aa
AA seq
DB search
MASFPSTKKMRDIATCPICMNLMTHPVSIKCGHNFCQLCIVEFFNRVHLLHPAVTKLDCP
LCRGLFDKNSLRPNKELENIIEVIKEMEELDQEVLCKQHGEKLHLFCEDEGQLICWRCER
SEHQGHATALVEEVYQGYKEQLQNAMVNLNQLQEECLNHKVFVTMQMNDWKEEINIKRQK
IRSDFKNLRSFLHEEEKSYIWKLEKEEEQMLKRMRSSETSLEQKSNELKSHILELEAKCQ
GSVQNMLQGVKDTLVRSSAVKLENPENFSLEIHTMCNVSELYFDVKKTVKRYQVSVTLDP
STAHPDLLLSDDRRQVTRGCSKEYLEVSSKRFTAFPCVLGCEGFTSGRHYFEVDVGEGTG
WDLGVCLENVQRGTDMRQEPEFGFWTIRLCKQIVALTSPPTPLHLNEQPLVVGIFVDYEA
GVVSFYNMTTGSHMFTFPRVSFSDTLLPYFQVYQHSPLFLPPPDE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatttcctagcaccaagaagatgagagacatagccacctgccccatctgtatg
aacctgatgactcatccagtgagcatcaaatgtgggcataacttctgccagttgtgcata
gtggaattctttaacagggtgcacctgttacatccagcagtaacaaagttggactgccct
ctctgtcggggcctatttgataaaaacagcttgaggcccaacaaggagctggaaaacata
attgaagtcatcaaggagatggaagagctggaccaggaagtgctatgcaagcaacacgga
gaaaagctccacctgttctgtgaagatgaaggccagctcatctgctggcgctgtgagcgg
tcggagcaccaggggcatgccacagctcttgtggaagaagtataccagggctacaaggaa
cagctccagaatgctatggttaacttgaatcaactccaggaagaatgtttgaatcacaaa
gtgttcgtgacgatgcagatgaatgactggaaggaagagataaacataaagagacaaaaa
atcaggtctgacttcaagaacctccggagctttctgcatgaggaggagaaatcttacatc
tggaagctggaaaaagaagaagagcagatgctgaagagaatgaggagcagtgagaccagt
ctggagcagaagagcaatgaactcaagagccatatcctggaactggaggcaaaatgtcaa
ggctcagtccagaacatgcttcagggtgtgaaagacactttggtcaggagttcagcggtg
aagctggaaaaccctgagaacttttccctggagatccatactatgtgcaatgtctctgag
ctttattttgatgtgaagaaaacagtaaagcgctatcaagtcagtgtgactctggatcca
agcactgcacatcccgacctattactgtctgatgatcggagacaagtgactcgcggatgc
tccaaggagtatcttgaggtttcgtccaagagatttactgcctttccctgtgtcctgggc
tgtgagggcttcacttcaggaagacactactttgaagtggatgttggagaaggaactggt
tgggatttgggagtttgcttggaaaatgtacagaggggcactgacatgaggcaggagcct
gagtttggattctggaccattagattgtgcaaacaaattgtggcacttacctctccccca
actcctcttcatctgaatgagcagcccctggttgtagggatttttgtagactatgaggcg
ggagtggtgtccttttacaacatgactactggttctcatatgtttaccttccctagagtt
tccttctctgatactctcctcccctatttccaggtttatcagcattctcctttgttcctg
cctcctcctgatgagtaa
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