Perognathus longimembris pacificus (Pacific pocket mouse): 125352984
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Entry
125352984 CDS
T08928
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125352984 (Shoc1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125352984 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
DUF7083
Motif
Other DBs
NCBI-GeneID:
125352984
NCBI-ProteinID:
XP_048204362
LinkDB
All DBs
Position
1:complement(142945372..143019634)
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AA seq
1547 aa
AA seq
DB search
MGARSAATKVTCRGPVLASGSALHLQSRVQWAGTFSLHAFPSPPSSALDANDYKAGRKIL
PQDAVRKKFCRGLFLQNPSFLCQDGNNIDDDYRRPWTKVTEVPVQGMTDDSILDEWKADF
CAEDFVEQQTITGIVNPINGVFEEIVPSSNPNSPTNIEDILHTLKDNSAVFTSIESLENY
PALQSQNRDLLIEDDKISFVNDLVTDKSKLPTLNTLPSRPKLFMVKGLLLDFKDQSSKEA
NLFRECFSFQEDLEGFAKEEFYMNKENFCQKKLVGLREPSASAFPSDCESLISTSLRQKK
DTPSSSEPRESLNIMPKVINYIGDGEKLLKGDLTTKHGVDAEDTKCSSTQILTIQSQSEP
EHSEPGELEIPLSSLNTISQQSSMNLLCTELQTFSFSPICNLTSRIVKETVNKYSMSWQL
EICRSSLISFLLTGPSIGKPNSQYSVTELRKIFCIKEERLVISPVKAAWWKQVGLNPVMT
ETLQHLNLYLHHDSPSSSETKMEINLPKKGLPLESWLEDKCHSSPTIHINNKKSNNYHTA
FPQKSLSSPNEVPDLHVSEEWGSAKRQKREENLKNNQELAGRIIKKKEKKDNIELDCTLP
FTPTESSSKIKKTSFEHNKKLENDLDLLSNFIMLRNKYNTSNSKTEDTDDDKKDEFHHKE
ECSLTLQKPSPIVSTNKTLNINEETVADNVIEIQASDTQCQAYCLLESAAAPIFKNLVSL
CPFPAANWKFATVLFDQTRFFLKEQEKIISDAIPHGTNSERETTYKYAAVLHLLVTIRDV
LLTCNLDTALGYLTNAKDVYKNILGSYLDDIWRKLKIIQFIKYKKPETNHKLQELKNQIL
MWMQREQQIKVLIIIRMDSDNEKHLLTKILNKVEGLTLTTFHLNGKKDFLESTGVLNRNS
CVIVNNQNIRADFPWSSFSFVVEYNHAGHSCWKTHCETLNIPFVAFKVILPDTVLARSTV
LDRFGGFILGIQIPYVFFATEGLLNTPEILQLLESNYSITLVERCCSESLKLFGSTEYYV
VVTIDEHTAVILQDLQELNYERASDNIIMRLMALSFQYSDCWIILYNKGTLNSGYHLTEK
TLHHLALIYAALVSSGLKSEELDVKLVITPGGEKTASIIRQIADHNLMNSKRDPCEWLDK
SWLEVLPSKEEMYLLDFPCINPLVAQLMLNKVPSLQWLLSAAPGQLQELLPNVPEKVVKH
FCSITSLFKINSSSITKSPQSLSPREERIGTSTFISQRSASGSSHSAIKEHNNDYCSYSE
AEETVKEDTNAPSDYNSCFMELRKTPGILPSLTSYAPTRNLKGSSCSPSVVQSNTFLINT
TSKRAVCNSFPNQNDPGSDIFSLGLTHRETKIVPIDTQRRTTPNFINYQKKGPPEAKEVA
ASMFSIEDSQSLLHGNFKKNVCKKQNHSFNLTYGADTTYDKWYSEKDNLFTNQQKSLSDE
LESFTCGSSNVGTKKILWRQLPSIPSVDVFSASDSNAAQKEFNSLTMYQRPGKCSGQKRH
LESSSNSGYQEPLAGSMFSQSPQLKTRRLMYEKVPGRSDGQTRLRFF
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgcggagtgctgcaaccaaggtcacatgtcgggggcctgtgctggccagtggg
agcgctctgcatctgcagtcacgtgttcagtgggcgggaaccttttctctccatgctttt
ccctccccaccatcttcggcgttggatgccaatgactacaaagccggccggaagatttta
cctcaggatgcagttagaaagaagttctgcagaggtttatttcttcaaaatccttcattt
ttatgtcaagatggaaacaatattgatgacgattataggagaccatggacaaaagtcact
gaggttccagttcagggaatgacagatgactcaatattggatgaatggaaagcagatttc
tgtgcagaagatttcgttgagcagcaaacaattacaggaatagtgaatccgattaatggt
gtatttgaagagattgttccaagttcaaacccaaactctccaacaaacatagaagacatc
ttacataccctcaaggataacagtgcagtctttacatctattgaaagtttagaaaactat
ccagcacttcaatcacagaaccgagatttacttattgaagatgataaaatcagttttgta
aatgatttggtgactgataaaagtaaactaccaactttaaatactcttccaagtagacca
aaactatttatggtaaaaggcctccttttagatttcaaagaccagagctctaaagaagct
aatttgtttagggaatgtttttcttttcaagaagatctggaaggttttgcaaaagaagaa
ttttatatgaataaagaaaacttttgtcagaaaaaattagtaggtttacgtgagccatca
gcatcagcttttccttctgactgtgaatccttaatatctactagtctcagacaaaaaaag
gatactccatcatcttcagaaccaagagaatcattgaatataatgccaaaagtaatcaat
tatataggtgatggtgaaaaacttttgaaaggagatctcactaccaagcatggagttgat
gctgaagatacaaaatgcagttccacacagatattgactattcaaagtcagagtgaacca
gagcacagtgaaccaggagaattggaaataccactgtctagcctaaacacaataagccaa
cagtcttcaatgaatttgttatgtacagaacttcagacattttcattttctcctatttgt
aatcttacttcacgtattgttaaagaaacagttaacaaatactctatgtcgtggcaatta
gaaatctgcagaagctctctgatctcatttttgcttacagggccaagcattggtaagccc
aacagtcaatattcagttacagagctgagaaaaatcttttgtatcaaagaagaaaggctt
gtgattagtcctgtaaaggcagcatggtggaaacaagtaggactaaatccagtaatgaca
gaaactttgcaacatctgaatctatatttgcaccatgacagtccatcttctagtgaaacg
aaaatggaaataaacttgcctaaaaaaggacttccattagaatcatggctagaagataaa
tgtcattcctcacctaccatacatattaataataagaaatctaataattatcacacagca
tttccacaaaagagtctatcttcaccaaatgaagtaccagatctgcatgtgtctgaagaa
tggggctctgctaaaagacaaaaaagagaagaaaatctaaaaaacaatcaagaactagct
ggaagaataatcaaaaaaaaagaaaagaaagataacattgaacttgactgtacactacct
ttcacacctactgaatcatcttcaaaaattaagaaaacatcttttgagcataataaaaaa
ttggagaatgatttggaccttttgagcaactttattatgctgagaaataaatataatact
tctaactcaaagactgaagacacagacgatgacaaaaaagatgaatttcaccataaagaa
gaatgttctttgactcttcagaaaccaagtccgattgtttctactaataaaactctcaac
ataaatgaagaaacggtagcagataatgtcattgaaattcaagcatcagatactcagtgc
caagcctactgtctcttagaatcagcagctgctcccatctttaaaaatcttgtgtctctt
tgtccttttcctgctgctaactggaaatttgccactgttctttttgaccaaacaaggttc
ttcttaaaagaacaagaaaaaataataagtgatgccattcctcacggtacaaattctgaa
agagaaacaacctacaagtatgctgctgtcttacaccttttggtgacaattagagatgtc
cttttaacatgcaacttggacacagcattgggatatttgacaaatgcaaaagatgtctac
aaaaatattttaggctcctatttggatgatatttggagaaagctgaagattatacagttt
attaaatataaaaagcctgaaacaaaccataagttacaagaattgaaaaatcaaatacta
atgtggatgcaacgtgaacagcaaattaaggtgctgattataataagaatggactcagac
aacgaaaaacatttgctcactaaaatccttaacaaagtagaaggtttaacattgactact
ttccatttaaatggaaaaaaagactttctggaatctacaggggttttgaacaggaattcc
tgtgtaattgtaaataatcaaaatatcagagcagatttcccctggagcagcttctcattt
gttgtggaatacaatcatgcaggacattcttgttggaagacgcattgtgaaacattgaac
attccctttgtggcctttaaagtgattcttccagacacagtcttagcaagaagtactgtg
ctggatagatttggtggttttattttgggaattcagattccatatgtgttttttgcaacc
gaaggacttcttaatactccagaaatacttcaactgctagaatctaactatagtatcaca
ctagtggaaagatgctgcagtgagtcactgaaactctttggaagtacagagtattatgtg
gtagtaacaatcgatgagcacactgctgtaatcttacaggacctccaagaactgaattat
gagagagcatcagacaacatcattatgcggttgatggcattatcattccagtacagtgat
tgttggatcatattatataacaagggaaccttaaattcagggtatcatcttacagaaaag
acacttcatcacctagcattgatttatgcagctttggtttcctctggccttaaatctgaa
gaactggatgtaaagcttgtaattactccaggaggagaaaagactgcatcaataattcgt
caaattgctgaccacaatttaatgaactcaaaaagagatccttgtgaatggctggataaa
tcatggcttgaagttttgccatctaaggaagaaatgtacttacttgatttcccatgcatt
aacccgttggtggctcagctcatgttaaataaagtgccttcactgcagtggctgttatca
gcagccccaggtcaactccaggaacttctacccaacgttccagaaaaagtggtaaagcat
ttttgtagcatcacctctttattcaagattaattcttcttccataacaaaatcacctcaa
agtttatcacctcgggaagagaggattgggactagtacctttatttctcagcgttcagct
tctggctcttcacactctgccattaaagagcataataatgactattgctcatactcagaa
gcagaagagacagtgaaggaagacacaaatgccccttcagattacaactcttgtttcatg
gaactaagaaaaaccccaggtattttaccatctctgacatcttacgctccaacccggaat
ttgaaaggctccagttgtagccccagtgttgtacaaagcaatacttttctaattaataca
acatcaaagagagcagtttgtaactcctttccaaatcagaatgatcctggatcagatatc
ttttctttgggcctaacacatcgtgaaaccaaaatcgtaccaattgatactcagaggaga
actacccctaattttataaattatcagaaaaagggtccaccagaagcaaaagaagtagct
gcctctatgttttcaatagaggactctcaatctcttcttcatgggaactttaagaaaaat
gtatgtaagaaacaaaatcactcattcaacttgacatatggagcagacactacctatgac
aaatggtactctgaaaaagataatttatttactaatcagcagaagtctctctcggatgaa
ttggaaagtttcacatgtggaagttcaaatgttgggaccaaaaagattttgtggaggcaa
ttaccatctattcccagtgtggatgtattcagtgcttctgattctaatgcagcccagaaa
gaattcaacagccttactatgtaccaaagacctggaaaatgttcaggacagaaaaggcac
cttgaatcttcatctaattcaggataccaagaaccattagcaggctcaatgttctcacag
tcaccacaactgaaaacacgacgcctaatgtatgaaaaagttcctggaagaagtgatgga
caaacccggctgaggtttttttga
DBGET
integrated database retrieval system
