Perognathus longimembris pacificus (Pacific pocket mouse): 125353196
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Entry
125353196 CDS
T08928
Symbol
Xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03008
Ribosome biogenesis in eukaryotes
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125353196 (Xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
125353196 (Xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125353196 (Xrn2)
03019 Messenger RNA biogenesis [BR:
plop03019
]
125353196 (Xrn2)
03009 Ribosome biogenesis [BR:
plop03009
]
125353196 (Xrn2)
03016 Transfer RNA biogenesis [BR:
plop03016
]
125353196 (Xrn2)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125353196 (Xrn2)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125353196 (Xrn2)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
RNases
125353196 (Xrn2)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125353196 (Xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
125353196
NCBI-ProteinID:
XP_048204665
LinkDB
All DBs
Position
6:complement(50629837..50704778)
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AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQRE
KRKRMKRDQPAFTPSGILTPHALGARNSPGSHVASNPRQAAYEMRMQNNSSPSISPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGGDVLFVGKHHPLHDFISELYQTGSSEPVDVPPELCHGIQG
KFSLDEEAVLPDQIVCSPVPMLRDLTQNTAISINFKDPQFAEDYIFKAVMLPGARKPAAV
LKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGMYSNAAPPPGT
YQGNLYRPLLRGQAQIPKLMSNMRPQEPWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQSQ
NAPFQPNQYQMLGGPGGYPPRRDDRGGRQGYPREGRKYPLPPSSGRYNWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagcgttcttccgctggctcagccgcaagtacccgtctatcattgtcaac
tgtgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatttgtatttggatatgaatggaatcatccac
ccctgtactcatcctgaagataaaccagcaccaaaaaatgaagatgaaatgatggttgca
atttttgagtacattgacagacttttcaatattgtaagaccaagacgacttctctacatg
gcgatagacggagtggcaccacgtgctaaaatgaaccagcaacgttcaaggaggttcaga
gcatcaaaagaaggaatggaagcagcagttgagaagcagcgagtcagggaggaaatactg
gcaaaaggtggctttcttcctccagaagaaataaaagaaaggtttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggagaacacaaaatcatggattacattagaagacaaagagcccagcctaat
catgacccaaatactcatcattgtttgtgtggagctgatgctgatctcattatgcttggc
cttgctacacatgaacccaactttaccattattagagaagagtttaaaccaaacaaaccc
aaaccatgtggtctttgtaatcaatttggacatgaggtcaaggattgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgcagaaggagaa
tttatcttcctccggctgaatgttcttcgtgagtatttggaaagagaactcaccatggcc
agcctaccattcacattcgatgtggagagaagcattgatgattgggtgttcatgtgcttc
tttgtgggaaatgacttccttcctcatttgccatccttagagattagggaaggtgcaatt
gatcgtttggttaacatatacaaaaacgtggtgcacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcagagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaagatgatgaggacagttttagaagacggcagagagaa
aaaagaaaaagaatgaagagagatcaaccagcttttactcctagtggaatattaacccct
cacgccttgggtgcaagaaattcaccaggttctcatgtagccagcaatccaagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcaatatctcctaatacaagtttc
acatcagatggctccccgtctccaataggaggtattaagagaaaagcagaagacagtgac
agtgaaccagagccagaggataacgtcaggttatgggaggctggttggaagcaacggtac
tacaagaacaaatttgatgttgatgcagctgatgagaaattccgccgtaaggttgtacag
tcttatgttgaaggactttgctgggttcttcgatattattatcagggctgtgcttcctgg
aagtggtactatccattccattatgcgccatttgcttcagactttgaaggtattgcagac
atgccttctgattttgagaagggaacaaaaccgtttaaaccactggaacaacttatggga
gtctttcccgctgcgagtggtaattttctacctccatcatggcggaagcttatgagtgat
cctgattcaagtataattgacttctaccctgaagattttgctattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctgctaccattcgtggatgagcgaaggctgcgagct
gccttagaagaggtgtatccagatctcactccagaagagaacagaagaaacagcctggga
ggtgatgtcttgtttgtggggaaacatcacccacttcacgacttcatttcagagctgtac
cagacaggttcctcagagccagtagatgtaccacctgaactgtgtcatgggattcaagga
aagttttctttggatgaagaagccgttcttcctgatcaaattgtatgttctcctgttccc
atgttgcgggacctgacacagaatacagcaataagtattaattttaaagacccacaattt
gctgaagattatatttttaaggctgtcatgcttccaggagcaaggaagccagcagcagta
ctgaaacctggtgactgggaaaaatctagcaatggacgacaatggaagccccaacttggc
tttaaccgggacaggcggcctgtacacctggatcaagcagcctttaggactttgggccat
gtcatgccaagaggctcaggaactggcatgtacagcaatgctgctccaccacctgggact
taccagggaaacttatacaggccactgttgagaggacaagcccagatcccaaaacttatg
tcaaatatgaggcctcaggaaccctggcgaggcccacctcctcttttccagcagcagaga
tttgacaggggcgttggggctgaaccattacttccatggaaccggatgctccagtcccaa
aatgcaccctttcagccaaaccagtaccagatgcttggcggacctggtggctatccaccc
aggcgagatgatcgtggagggagacagggataccccagagaaggaaggaaataccctttg
ccaccatcatcaggaagatacaattggaattaa
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