Perognathus longimembris pacificus (Pacific pocket mouse): 125353306
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Entry
125353306 CDS
T08928
Symbol
Siglec1
Name
(RefSeq) sialoadhesin isoform X1
KO
K06548
sialoadhesin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125353306 (Siglec1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
plop04090
]
125353306 (Siglec1)
04091 Lectins [BR:
plop04091
]
125353306 (Siglec1)
CD molecules [BR:
plop04090
]
Proteins
125353306 (Siglec1)
Lectins [BR:
plop04091
]
I-type lectins (Siglecs)
125353306 (Siglec1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
I-set
ig
V-set
Ig_5
Ig_4
C2-set_2
C1-set
Ig_CD22
BiPBP_C
C2-set
PKD
Motif
Other DBs
NCBI-GeneID:
125353306
NCBI-ProteinID:
XP_048204836
LinkDB
All DBs
Position
6:64141918..64185552
Genome browser
AA seq
1772 aa
AA seq
DB search
MSRGPRSRCHPAKPLSNSQASPFPFVPGTEMGGPCYRLTEETRAGSHGSTFPRALCCCVI
FFSALVPLLPGQTSWDVSSPSQVPGVKGSCLLIPCVFSFPSNVEVPDGITAIWYFDHTNK
RQVVSHSTNPELVEPRFRGRARLLGNPIHKVCNLLLTDLQPEDSGSYNFRFEITDNNRWL
DVKGTSVTVTDEPSVPTIESPVKLREGVQAIFNCSTPYVCPHEHDSLQWQGQDLTRSTTS
SHQELEPTGVRQMETLYMTPSWQDHGQWLSCQLSLAKRTSQSEVHLRVHYAPKGVEILLS
PSGRNILPGDLVTLTCRVNSSYPAVSAIQWFKDGEQLKADGRVLQLSQAAWSDSGVYTCQ
AENSVGSLISPPVSLHVFMAEVQVSPAGPILENQTVTLACNTPKEAPGELRYNWYKNNIL
LAGVHSPTLHLPNATRTDTGFYFCEVQNAQGRERSGPVGVTVMYPPRTPDMTAFLETKAG
LVGILHCSVVSEPVATLVLSHGDLILASSSGKNDYSPRFSISMAPNSLHLEIQDLQPSDS
GQYKCSANNSLGNATSSLDFFANEARLLISPAAQVVEGQAVTLTCKNGLNPTPNTRFSWY
LNGALLMEGSSDSLLLPEASSIDAGSYHCRAQDGHSSSDPSRPVVLTVLYAPRQPIFTAQ
LDLDASGIDVGRPGLLLCRVKSDPPAQLQLLHKGRVVATSVSVSGSCGPHGSCSQRIKIT
KAPNLLRVEIHNPVLEDEGEYLCEANNTLGKASISATFDAQATRLLISPSATLHEGAEAN
LTCQVNRETPESSANFSWFRNGALWAQGPLKTMRLRPVARTDAAIYTCCLLEDGAQLSAP
VVLSVHYPPDPPKLSALLDVSQGHMAVFVCTVDSSPVAHLSLFREEHLLATSQRPQHPSH
SRLQAKATANSLQLEVHELGLEDSGSYRCEATNALGSANASLFFKVREAWVQVSPSLELR
EGQDVVLSCQVPMEVPDGTSYQWYQNGHLLQESTSATLRIAAISPRQTGAYHCQVQVPGA
ATSSLAAPVSLHVSYAPRHATLTTLLATGPGRRSILLCTVASDPPSQLRLRHGDHLVATT
LQGVVDLANTSSQLQAMVSHNELRLDMEFTGLEDEGIYTCEATNTLGQASASVNFDVQAV
NVQVWPNATVQEGKEVALICHVWTNEKTQLTYTWYRDGQECQGAHSAQLNVTVKNATSYY
CGASLPGQAPRLSRPVTLNVLYAPRSLRLTYLLESRGGQLALILCTVDSRPPAQLTLSHA
GRLVASSSATSVPNILRLELRKPRLSDEGLYSCSAHSLLGQANTSLELRLEGVQVMLAPS
AAVPEGTPVTVTCEDPTARAPTLYTWYHNGHWLQEGPATSLQFHVATRAQAGSYSCQVQD
AQGTRSSRPVTLQVLYAPRDPVLSSFWDSRARLVAVVQCTVDSEPPAELTLSHHGKVLAT
SHEQHGSTPGVGHVQVARNALSLRLQDVPVGDDDIYVCTAWNSLGSVSTTQQLRAEGVHV
VAEPGLQVPEGAALNLSCHLLGGPRFLGNTTFTWFWNDQPLHAEPVATLTFSQVARAQAG
LYSCQVELSARMAATSVPVMLRVLYPPKMPTMTVFVEPEGGPQGILDCRVDSEPPASLTL
HLGSRLVASSQPQGVLAEPHIHVLASPNFLRVNIEELRPSDQGEYVCSASNALGSTSASA
YFGTRAARRLQLFQQLLWILGFLVSFLSLLLGLGACYTWRGRYCHKSDMENSLEMPSQRE
TMQEEKVVDACDHSDTVKKAALVLPTSGETEL
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgagcagggggccaagatctcggtgtcaccctgccaagcctctgagcaattcccaggca
agccccttcccctttgttccaggtactgagatgggggggccgtgctataggctcactgag
gagacaagagcaggttcccatgggagtacctttcccagggctctgtgttgttgtgtcatc
ttcttctcagcccttgtcccactcctcccaggccagacctcctgggatgtctccagtccc
agtcaggtgccaggcgtgaagggctcttgcctgctcatcccctgcgtcttctccttcccc
tccaacgtggaggttcctgatggcatcacggccatctggtactttgaccacacgaacaag
cggcaggtggtgagccactcaacaaacccagagctggtggagccccgcttccgaggccgc
gcccgactgctggggaaccccatccacaaagtctgcaacctgctgctgactgacctgcag
ccagaggactcaggctcctacaacttccgctttgagatcaccgacaacaaccgctggtta
gatgtcaaaggcacctcagtcacagtgactgatgagcccagtgtgcccaccattgagtcc
ccagtcaagctgcgtgagggcgtgcaggcgatcttcaactgctccacgccctacgtgtgc
ccgcacgagcacgatagcctgcaatggcagggccaggacctcactcgctctaccacctcc
agccaccaggagctcgagcccactggtgttagacagatggagaccctctacatgacccca
tcctggcaggaccacggccagtggctgagctgccaactctctcttgccaagcgcacaagt
caaagcgaggttcaccttcgtgtgcattatgcccccaagggtgtggagatccttctcagc
ccctcggggcggaacatccttccaggcgatctggtcacactcacctgcagagtcaacagc
agctaccctgctgtcagtgccatacaatggttcaaggatggggagcagctcaaagccgat
ggccgagtgctacagttgtcgcaggcagcctggagtgattctggggtctacacctgccaa
gcagagaacagtgtgggttctttgatctcaccccccgtcagcctccacgttttcatggct
gaggtccaggtgagccccgcaggtcccatcctggagaaccagacagtgacgctggcctgc
aacacgcccaaagaggcccccggtgagcttcgctacaactggtacaagaacaacatcctg
ctggcgggtgtccacagccccacattgcatctgcccaatgccaccaggacggacaccggc
ttctacttctgtgaggtgcagaacgcccagggcagggagcgctccggccctgtcggtgtg
acagtcatgtacccaccccgcaccccagatatgactgcctttctggagacgaaggctggg
ctggtggggatcctccattgctcagtggtcagtgagcccgtggccacgctagtgctgtca
catggggacctcatcctggcctctagctctgggaagaatgattacagcccacgcttcagc
atctccatggctcccaactccctgcacctggagatccaagacctgcagccatccgacagt
gggcagtacaagtgctcagccaacaactcccttggaaatgccacctcctccctggatttc
ttcgccaatgaggcccgccttctcatcagcccagcagctcaggtggtagaagggcaagca
gtgactctgacctgcaagaatggcctgaacccgacacccaacacccgtttctcctggtac
ctgaatggagccttgcttatggagggaagcagcgacagccttcttctccctgaggcctcc
agcatcgatgctggctcctaccactgcagggcccaagatggccacagctccagcgacccg
tcccggcctgtggtcctcactgtgctctatgccccacgccagcccatttttactgctcaa
ctggatctcgatgcttctggaattgatgttggccggccgggcctcctcttgtgccgtgtg
aaaagcgatcccccagcccagctacagctactgcacaagggccgtgttgtggccacttct
gtgtcagtgagcggcagctgtggcccacatggaagctgctcccagcgcataaagatcacc
aaagcccccaacttactgcgtgtggagattcataacccagtgctggaggatgagggagag
tacctgtgtgaggccaacaatactctgggcaaagcctccatctcagccacatttgatgct
caggctactcgcctgctcatctcaccgtcagccacacttcatgagggggcagaggccaac
ctgacctgccaagtgaatcgagaaacccccgagagctcggccaacttctcctggttccgg
aatggggccctgtgggcccagggccctctgaagaccatgaggctgaggcctgtggccagg
acagatgctgccatctacacgtgttgcctcctggaggatggtgcccagctctctgctcct
gtggtcctgagtgtgcactatcccccagatcctccaaagctctcggccctcctggatgtg
agccagggccacatggcagtgtttgtctgcactgtggacagtagtcctgtggctcacttg
tccctgttccgtgaggagcacctcctggccaccagccagagaccccagcacccatcccac
agcaggctccaggccaaggccacagccaactccctgcagttggaggtccacgaactgggc
ctcgaggactcgggaagctaccgctgcgaggccacaaatgctctcggatcagccaacgcc
tcgcttttcttcaaggtccgagaagcctgggtccaggtctcaccatcactggagctccgg
gagggccaggatgtggtcctaagctgccaggtgcccatggaggtccctgacgggacctca
taccagtggtatcagaatggccacctcctccaggagtcgacttcagccacgctccgaatt
gcagccatatctcccaggcaaactggggcctaccattgtcaagttcaagtcccaggtgca
gccacctccagcctggctgctcctgtcagcctccacgtgtcctatgctccacgccatgcc
acgcttacaaccctgctggctacaggcccaggacggcggagcatccttctgtgcactgtg
gccagtgatcctccatcccagcttcggctccgccatggtgaccacttggtggccaccacc
ctccagggtgtcgtggaccttgcaaacacctcttcccagctgcaagcgatggtgtcccac
aacgagctgcgtctggatatggaattcacagggctggaggatgagggcatctacacctgc
gaggccaccaacaccctgggccaggcctcagcttcggttaactttgatgtccaggccgtg
aatgtgcaggtgtggcccaatgccactgtgcaagaggggaaggaggtggctttgatctgc
cacgtctggactaatgagaagacccagctcacctacacatggtaccgtgatgggcaggag
tgccaaggtgctcattctgcccagctcaacgtcacggtcaagaatgccacctcttattac
tgtggcgcaagtctccctggccaggcaccccgcctctccagacctgtcaccctgaatgtc
ctctatgcaccccgtagcctgcgcctgacctacctcctggagagccggggagggcagctg
gctttgatactgtgcactgtggatagccgcccccctgcccagctgaccctcagtcatgcc
ggtcgtcttgtggcctcctcatcagcaacatctgtccccaacatcctgcgcttggaactt
cggaagccaagactcagtgacgaaggactctacagctgctcagcccacagccttctgggc
caggccaatacatctctggagctgcggctagagggtgtgcaggtgatgctagctccatca
gctgcagtgcccgaggggaccccagtcactgtgacctgtgaggaccccaccgcccgtgca
cccaccctctacacttggtaccacaatggccactggctgcaggaggggccagccacctca
ctccagttccatgtggccacacgggctcaagctggctcctactcttgccaggttcaggat
gctcagggcactcgcagctcccggcctgtcaccctgcaagtcctctatgcccctcgggac
cctgtcctgtcctccttctgggattcccgggccaggctcgtggccgtggtacagtgcact
gtggacagtgagccacctgctgagttgactctgtcccaccatggcaaggtgttagccacc
agccatgagcaacatggctccacaccaggggtaggccatgtccaggtggcccgcaatgcc
ctgagtctgaggctacaagatgtgccagtaggtgatgacgacatctatgtgtgtacagcc
tggaactcactgggctcagtcagcaccactcagcagctgcgggcagaaggtgtgcacgtg
gtggccgagccaggcctgcaggtgcctgagggggcagctctgaacctcagctgccacctc
cttggtggccccaggttccttggcaacaccaccttcacctggttctggaatgaccagcca
ctgcatgcagagcccgtggccacgctcaccttcagccaggtggcccgtgcccaggctggg
ctgtacagctgccaggttgagctctctgccagaatggctgccacctcggtcccagtcatg
ctccgtgtgctgtaccctcccaagatgcctaccatgacagtgtttgtggagcctgagggt
ggcccccagggcatcctggattgtcgggtagacagtgagccccctgccagcctcactctc
cacctgggcagtcgactcgtggcctccagccagccccagggtgtacttgctgagccacac
atccatgtgttagcctctcctaacttccttagggtgaacattgaagagctgaggcccagt
gaccaaggggagtacgtgtgttctgcctccaacgccctgggctccacctctgcctctgcc
tactttggcaccagagctgcacgaaggctgcagctgttccagcagctgctctggatcctg
ggatttctggtgagcttcctgagcctgctgctgggcctgggggcctgctacacctggagg
ggaaggtattgtcacaagagtgacatggagaactcgctggagatgccttctcagagagaa
accatgcaggaggagaaagtggtggatgcctgtgaccattcagacactgtgaagaaggca
gcattagtcctgccaacctctggagaaacagagttgtga
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