Perognathus longimembris pacificus (Pacific pocket mouse): 125353380
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Entry
125353380 CDS
T08928
Symbol
Cdk5rap1
Name
(RefSeq) mitochondrial tRNA methylthiotransferase CDK5RAP1
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125353380 (Cdk5rap1)
Enzymes [BR:
plop01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
125353380 (Cdk5rap1)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
125353380 (Cdk5rap1)
Prokaryotic type
Methylthiotransferases
125353380 (Cdk5rap1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
125353380
NCBI-ProteinID:
XP_048204974
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Position
6:complement(67918616..67941883)
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AA seq
588 aa
AA seq
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MHPLQCVLQVQRTVRWGPLASMSWRLLRTCRAHSSHPSAACSGPESQKNGDQKDFSSRLA
TGPTFQHFLRNASAPQETPSPSELEDPPPYLTAKELLGKQRKVYLETYGCQMNVNDTEIA
WAILQKSGYLRTSNLQEADVVLLVTCSIREKAEQTIWNRLHQLKALKTKRPRSRVPLRVG
ILGCMAERLKEEILNREKIVDLLAGPDAYRDLPRLLAVADSGQQAANVLLSLDETYADVM
PVQMNPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTL
LGQNVNSFRDNSEVQFNNAVSTNLSRGFSTNYKSKQGGLRFSYLLDQVSRIDPEMRIRFT
SPHPKDFPDEVLQLICERDNICKQIHLPAQSGSSRVLAAMRRGYSREAYVELVHHIREII
PGVSLSSDFIAGFCGETEEDHLQTVSLLRDVQYNMGFLFAYSMRQKTRAYHRLKDDVPEE
VKLRRLEELITVFREEASKAHKTSVGCTQLVLVEGLSKRSSTELCGRNDGNLKVIFPDVE
MEDVTNPECTVRAQPGDYVLVKITSASSQTLRGHGLCRTTLKDSSANG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctttacaatgtgtcctccaagtacagaggactgtaaggtgggggcccttggcc
tccatgtcctggcgactgctcagaacctgcagggcccacagcagtcaccccagcgctgca
tgttctggtccagagagtcagaaaaatggagaccagaaggatttcagttccaggctggcc
actggaccgacgtttcagcattttttaagaaatgcttcagcccctcaagagacgccatct
ccttcagagttagaggacccacccccctatctcacagcaaaagaacttctaggaaagcag
aggaaagtctacctggagacgtatggctgccagatgaatgtaaatgacacagagatagcc
tgggccatcttacagaagagtggctaccttcggaccagcaacctacaggaggctgatgtg
gtccttcttgtcacgtgttccatcagggagaaggctgagcagaccatatggaatcgttta
catcagcttaaggccctgaagacaaagcggccccgctcccgagttcctctgagggttggg
attctaggctgcatggctgagaggctgaaggaggagatcctcaacagggagaaaatagtg
gatctcctggctggtccagatgcctatcgggaccttccccggctgctggctgttgctgat
tcaggccagcaagctgccaatgtgctgctctccttggacgagacctatgcagatgtcatg
ccggtgcagatgaatcccagtgccacttctgccttcgtgtctatcatgaggggctgtgac
aacatgtgcagctactgcattgttccttttacccggggccgtgagaggagtcggcctgtt
gcctccattctggaggaagtgaggaagctttctgagcaggggctgaaagaagtcacactt
cttggtcagaatgttaatagttttcgggacaactcagaggtccagttcaacaatgcggta
tctaccaacctcagtcgcggcttctccactaactataaaagcaaacaaggagggcttcgt
ttctcttaccttctggatcaggtttccagaatagatcctgaaatgcggatccgttttacc
tctccccaccccaaggattttcctgacgaggttctgcagctgatttgtgagagagacaac
atttgtaagcagatccacctaccagcccagagtggaagtagccgtgtactggccgccatg
cggagaggatattcaagagaagcttatgtggagcttgttcaccatatcagagaaattatt
ccaggcgtgagcctcagcagcgactttattgctggcttttgtggggagacagaagaagat
catctacagacagtgtcgctgcttcgagatgttcagtacaacatgggcttcctctttgcc
tatagcatgagacagaagacccgggcatatcacagactaaaggacgatgttccagaagaa
gtcaaattaaggcgtttggaggaacttattactgtcttccgagaagaagcttcaaaagcc
cataagacctctgtgggttgtactcagctggtgttggtagaggggctcagcaagcgctct
tctactgagctgtgtggccggaatgatgggaatcttaaggtgatcttccctgacgtagag
atggaggatgtcactaatcctgagtgcacggtcagagcccagcctggggactatgttctg
gtgaagatcacctctgccagctcccagaccctcaggggccacggcctctgtaggaccact
ctgaaggattcctcagctaatggctga
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