Perognathus longimembris pacificus (Pacific pocket mouse): 125353656
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Entry
125353656 CDS
T08928
Symbol
Nhlrc1
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125353656 (Nhlrc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125353656 (Nhlrc1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125353656 (Nhlrc1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125353656 (Nhlrc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
Baculo_IE-1
Prok-RING_4
zf-C3HC4
RING_XB3-XBAT31
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
125353656
NCBI-ProteinID:
XP_048205278
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All DBs
Position
6:23299820..23301016
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AA seq
398 aa
AA seq
DB search
MGEEEAARGTRRELLPELVREADTSLLECKVCFERFGHRQQRRPRNLPCGHVVCLACVAA
LAHPRTLALECPFCRRACRACDTSDCLPVLHLLELLGSTLHQAPAAPSAAPSTPGTLTCQ
HAFGGWGTLVNPTGLALCPKTGRVVVVHDGKRRVRIFDSAGGCAHQFGEKGEAAQDVRYP
LDVTVTNDCHVVLTDAGDRSLKVFDFFGQIKLVIGGQFSLPWGVDTTPQNGLVVTDAQGG
SLHLLEVDFADGVLRRTERLQAQLRNPRGVAVSWLSGAMAVLEHPSALETGPCNTRVKVF
SSTMQLIGQVDTFGLSLFFPSRITLSAVTFDHQGHVIVADTAGPAILCLGKPEEFPVLKP
MVTHGLSYPVALAFTKEYSLLVLDTASHSIKVYKADWG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggaggcggcccgcgggacccggcgggagctgctgcccgagctggtgcgc
gaggccgacaccagcttgctggagtgcaaggtgtgctttgagaggttcggccaccgccag
cagcggcgcccgcgcaacctgccctgcggacacgtggtgtgcctggcctgcgtggccgcc
ctggcgcacccgcggacgctggccctcgagtgccccttctgccggcgagcctgccgggcc
tgcgacaccagcgactgcctgccggtgctgcacctgctggagctcctgggttccaccctg
caccaggccccggccgctccgagcgccgccccgagcacccccgggaccctcacctgccag
cacgcgttcggcggatgggggaccctggtcaaccccacggggttggccctgtgtcccaag
acgggacgggttgtggtggtgcacgatggcaagaggcgggttaggatctttgactccgcg
ggtggctgtgcccatcaatttggagagaagggggaggccgcgcaggacgtgaggtaccca
ctggacgtcacggtcaccaacgactgccacgtggtgctcaccgacgccggcgatcgctcc
ctcaaagtattcgatttctttgggcagatcaagctggttatcggaggccagttttccttg
ccttggggtgtggacaccacccctcagaacgggctggtggtcacggatgctcagggcggg
tctctgcacctcctggaagtcgacttcgcggatggggttcttcggagaaccgagaggctg
caggcgcagctgcgcaacccccgcggggtggccgtgtcgtggctctctggggccatggcg
gtcctagagcatccctcggccctggagaccgggccctgcaacacaagggtgaaggtgttc
agctctaccatgcagctgatcggccaggtggataccttcgggctgagcctcttcttcccc
tccagaataaccctgtcggccgtgacctttgaccaccagggccatgtgatcgtggcagac
actgcaggcccagccatcctgtgcttggggaaacctgaggagtttccagtactgaagccc
atggtcactcacgggctctcttatcctgtggcactggcctttaccaaggagtactctctt
cttgtgctggataccgcatcgcattctataaaagtctataaagcagactgggggtga
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