Perognathus longimembris pacificus (Pacific pocket mouse): 125353788
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Entry
125353788 CDS
T08928
Symbol
Col20a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125353788 (Col20a1)
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
Motif
Other DBs
NCBI-GeneID:
125353788
NCBI-ProteinID:
XP_048205398
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All DBs
Position
6:86027288..86057380
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AA seq
1359 aa
AA seq
DB search
MFQLQTSSGPEDRQRWPDLNAEGTEGWAPLEASRRPEGRSGPCCPASRPCPGAVCSSGTL
SQPIEPDGPEEQGTLSVEPQEEQESVQARAAGVRAGLLSQSAAFPRRLHTMSPPVSHLGV
CLWMWLSGALVHGQVNSRLRLVVLPEDRLQMKWRDSEGSSLGYRVQVKPMAGDSEQEVML
TTKTPKATVGGLSPSKGYRVQIFQLTGSGPVLLARREFVIEDLKSNSPGRSSWRPAGPGP
EPTPSPPGGPDLEQNPEPTPQPGVTFASDLDLPTPHPPELSAAGPHFRCTPPVPTDMVFL
VDGSWSVGHRHFQQVKDFLASVIEPFEIGPDKVQVGLTQYSGDPRTEWELNAFHTREQVL
AAVRGLRYKGGNTFTGLALTHVLGQNLKPAAGLRREAAQVVILVTDGKSQDHVHTAARVL
KGLDIDVFAVGVKNADEAELKLLASWPLDITVHNVLDFSQLATLAGLLSRLICQKVQGRG
PGRGRATPAPPAPAPHPLPASASLDVTRVTSSSLHLSWTPAPQPPXKYLVVWRSSRGSIP
REAVVEGPTSSLELRNLTASTQYRISVLPVYEGGAGEGLQGLAVTAPLPVPQALTLAAVT
SRTLHLTWQPSAEATQYLVRYSPASSTGEEQSKEVRVGQPQVLLDRLEPGRSYEVSVQSL
RGPEASEARSLRATTSTRAPPRHLDFLNVSHDSARVAWADAQRPVRLVKVSYVSSDGGHS
GQTQASGDATSAALGPLAASTTYLVRVTRIYLGGGSATLAGRLTTRRAPGPSRLAVTALP
GDAARLSWAATGSPGVLAYRIKWTPLGEGKARELSVAGTLSTAILPGLGRHAEYEITVLA
CFRDGACSDPASIRYTPAACPALYPEALHPHGTLPGFDLMVAFGLVAREYASIPGVAMEP
SALGQAPTFTLFKDAQLTQRVSDVHPAALPPEHTILFLARLLPETPREAFALWQMTTEDF
QPILGVLLDAGRKSLTYFNHAARATVREATFDLREANKIFFGSFHKVHVAVGPSRVRLYV
DCHEVAERPIRPPASGSLQTAALITLGRLAKARGPQNSSATFQLQMLQVLCGDSWAAHDR
CCELPAARDREVCPASPSTCAHSSETPGPPGPQGPPGLPGKTGTPGEQGVPGPKGEPGPP
GQIGPEGPGGQQGSPGTQGRAIQGPMGPPGVKGEKGDHGLPGVQGHPGQPGTPGRTGPQG
PKGMRGLEGPTGLPGSPGPRGPQGLAGSRGTHGERGPPGVVGPTGLPGPKGERGEKGEPQ
SLTTIFQLVSQACESAIQTHVLRLSSFLHENARPPMPILTETAEPGRPAPLTSPDSSGEA
LLPRERARGNHLEDPGEPAALSQTDSPGLPGSQPPPPLG
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgttccagctgcagactagctccgggccagaggaccgccagagatggccggacctcaat
gctgagggcactgaaggttgggccccactggaagcttcccgcaggcctgagggtcgctcg
gggccgtgctgccctgcgtcgcgcccgtgtcccggggccgtgtgctcttcagggaccctc
agccagccgattgaaccagatggccccgaggaacaagggacgctctcggtggagccgcag
gaggaacaggagtccgtccaggcccgtgctgctggcgtccgtgctggcctgttgtcacaa
agcgcggcctttcctcgcaggctgcacaccatgagcccaccagtctcccacctgggcgtc
tgcctgtggatgtggctgagcggcgcgctggtgcatgggcaagtgaacagccgcctgagg
ttggttgtgctgcctgaggaccgactgcaaatgaagtggagagactcagagggcagcagc
cttggctacagggtgcaggtgaagcccatggcaggggactcggagcaggaggtgatgctg
accaccaagacgcccaaggccaccgtgggggggctgagcccctccaagggctaccgcgtg
cagatctttcagctcaccggctccgggcctgtgctgctggcgcgaagggagtttgtgatc
gaggatctgaagagtaactccccaggcaggagcagctggaggcccgcaggaccaggcccg
gagcccaccccttctcctccggggggcccagacctcgaacagaatcccgagccgactcct
cagcccggagtcacttttgcttcagacctggacctgcccactcctcatccacccgagctg
agtgcagcggggccccacttccgctgcacaccccctgttcccacggacatggtcttcctg
gtggacgggtcctggagcgtcggccacagacactttcagcaggtcaaagacttcctggcc
agcgtcatcgagccctttgagattgggccagacaaagtccaagtaggcctgacgcagtac
agtggggacccccggacggagtgggagctcaatgccttccacaccagggagcaggtgctg
gcagcggtgcgtggccttcgctacaagggaggaaacaccttcacaggcctcgccctaacc
cacgtgctggggcagaacctgaagccggcggcaggtctccgacgggaggccgcccaggtg
gtgattctggtgacggacggcaagtcgcaggaccatgtgcacacggctgcccgcgtcctc
aagggcctggacattgacgtctttgctgtgggcgtgaagaatgccgacgaggctgaactg
aagctcctggcctcctggcctctggatatcaccgtccacaacgtgctggacttctcccag
ctggccacgctggctggcctgctcagccgcctcatctgccagaaggtccagggcaggggc
ccaggccggggccgagccacaccagctccacctgctccagccccgcatcccctcccggcc
tccgccagcctggacgtgacccgggtcacttcctccagcctccacctgtcctggactccg
gctccgcagcctcccntcaagtatctggttgtgtggcgatcttccaggggcagcatcccc
agggaggcggtggtggaggggcccacctcatccctggagcttcgcaacctgaccgccagc
acacagtaccggatctccgtgctccctgtctacgaaggtggggccggcgagggcctgcag
ggcctggccgtcacagcacccctgcctgtgccccaggccttgaccctggctgcagtgacg
tccagaacccttcacctcacctggcagccctcggccgaggccacccagtacctggtgagg
tactcgccagcctcctccacaggcgaggagcagagcaaagaggtgcgggtggggcagcct
caggtactgctggatcgcctggagccaggcaggagctacgaggtctccgtgcagagcctg
cgcgggccagaagctagcgaggcccgcagccttcgtgccacgacctccacccgggcaccc
ccgaggcacctggacttcttgaacgtgagccacgactcggcccgtgtggcctgggcggat
gcccagaggcctgtgcgcctggtcaaggtcagctatgtctccagtgatggtggccactcc
gggcagacgcaggcctctggggacgccacgtcagccgccctggggcccctggccgcctcc
accacatacttggtgcgtgtcacccgcatctaccttggcgggggctctgctacactggcc
ggccgcctgaccaccaggagggccccgggccccagccggctggcggtgacggcgctgccg
ggggacgccgccaggctgtcgtgggcggccacgggctccccgggcgtgctcgcctaccgg
atcaagtggacgcccttgggagagggaaaggcccgcgagctctctgtggcggggactctc
agcactgccatcctgccgggcctgggcaggcatgcagagtacgagatcaccgtcctggcc
tgcttcagggacggggcctgcagcgaccctgcgtccatccgctacacgcccgcagcctgc
ccggccctgtacccagaggccctgcacccccacggcaccctcccagggtttgacctgatg
gtggccttcggcctagtggcccgggaatacgcctccatcccgggcgtggccatggagccc
tcggccttgggccaggccccgaccttcacactcttcaaggacgctcagctgacgcagcgg
gtcagcgacgtccaccccgccgccctcccgcctgagcacaccatcctcttcctcgcacgc
ttgctcccagagacgccccgagaagccttcgctctgtggcagatgaccacggaggacttc
cagcccatccttggggtgcttctggacgctggcaggaagtcgctgacctacttcaaccac
gctgccagggccaccgtgcgggaggccaccttcgacctgcgagaggccaacaagattttc
tttggaagctttcacaaggtgcacgtggctgtgggaccctccagggtcaggctgtacgtg
gactgccatgaggtggctgagaggcccatccgcccccctgcttctggaagcctccaaact
gccgccctcatcacgctggggaggttggccaaggccaggggcccccagaacagctctgcc
acattccagctccagatgctgcaggtcctgtgtggtgactcctgggcggcccatgacagg
tgctgcgagctcccggcggcgagggacagagaggtatgcccggcctccccttccacctgt
gcccactcctcagagacccctggacccccagggccccaaggtcctccgggcctccctggg
aagacgggcaccccaggagagcaaggtgttccagggcccaagggggagccagggccaccc
ggacagataggacccgagggtcccggaggtcagcaagggtcaccagggacccagggccgt
gccatccaggggcccatgggtccaccgggggtcaaaggagagaagggggaccacggactc
ccaggtgtgcagggccaccctggccagccaggcacccccgggagaactggcccccagggg
ccgaagggaatgagaggactggagggacccactggcctgcctggatcccctggccccagg
gggccccagggcttggcagggagcagaggcacgcacggcgagcgagggcctcctggggtc
gtggggcccacggggctgccagggcccaaaggggagcgcggagagaagggcgagccgcag
tcgctcaccaccatcttccagctggtgagccaggcctgcgagtcagccatacagacgcac
gtgctgaggctgagctccttcctccacgagaatgccaggcccccgatgcccatcctcacg
gagaccgcagagccaggcaggcctgcacccctgacatcccccgactcgagcggggaggcc
ctgctcccccgagagagggcacgtgggaaccacctcgaggacccaggtgagcccgcagcc
ctcagtcagacggacagccctgggctgccagggagccagcccccaccgccacttggatga
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