Perognathus longimembris pacificus (Pacific pocket mouse): 125353935
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Entry
125353935 CDS
T08928
Symbol
Taf4
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022
Basal transcription factors
plop05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125353935 (Taf4)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125353935 (Taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125353935 (Taf4)
03036 Chromosome and associated proteins [BR:
plop03036
]
125353935 (Taf4)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125353935 (Taf4)
Coactivators
SAGA/TFTC/STAGA complex
125353935 (Taf4)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125353935 (Taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
125353935
NCBI-ProteinID:
XP_048205646
LinkDB
All DBs
Position
6:complement(85101815..85162046)
Genome browser
AA seq
1049 aa
AA seq
DB search
MAAGSDLLDEVFFNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRAPELRAAAAGALGN
HVVSGSPAGAAGAGPAAPAEGAPAAAPEPPPAGRARPAGGGPRRAGPGSPRRPLVPAGPA
PAPAKLRPPPEASAGPCPAAAAAAAAAPVAAAAAAGPEPAAAPPAAGPGAAKPGPPGPGP
GTAQTLNGSAAPPTAPHAAPAVSPVNNGPAPPPAAGSVIQAAPAPAPAAPSPPAAPAPAA
PPPPAPPAPAAPARPPGHPAAPAPPRARRRRRRRAERGRGRRAAAAPAPVPAPATGGAAG
LGGQPGAGAPAQGGKAEPPKTAGPAAGAAAAAAGAAXGGVLLGPAMPGALPSPAGVPQPA
PGTPAGLPKGAVPAAAAAAAATPSLPRTPSATTTAGIRATLTPTVLAPRLPQPPQNPTNI
QNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQAQPQSTMAPRPATPTSAPPVQIS
TVQAPGTPIIARQVTPTTIIKQVSQAQTTVQSTTTLQQRSPGVQPQLVLGGSAQTASLGT
ATAVQTGTPQRTVPGATTTSTAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKEL
VQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQPP
PASQATTALTAVVLSSSVQRTAGKTAASVTSALQPPVISLTQPTQVIQQPPKPGALIRPP
QVTLTQTPMVALRQPHNRIMLTTPQQIQLNQLQPVPVVKPTVLPGTKALSTVSAQAAAAQ
KNKLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDDTFLLPA
PLQRRMLEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQ
ASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQEL
AQMRQRDANLTALAAIGPRKKRKVDCAGPGSGAEGSGPGTAVPGSSGVGTPRQFTRQRIT
RVNLRDLIFCLENERETSHSLLLYKAFLK
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatctgctggacgaggtcttcttcaacagcgaggtggacgagaaa
gtggtgagcgacctggtgggctcgctcgagtcgcagctggcggccagcgcggcccaccac
caccacctcgcgccgcgcgcgcccgagctgcgggccgcggccgccggcgcgctcgggaac
catgttgtgagcggcagcccggccggagccgcgggcgcagggccggccgcccccgccgag
ggcgcgcccgcagcggcgccggagccgccccccgcaggtagagcgcggccggcgggcggg
gggccgcggcgcgcgggccccggctcaccgcgccgcccgcttgtccccgcagggcccgcg
ccggcgcccgccaagctgaggccgccgcccgaggccagcgcggggccctgcccggccgcc
gccgccgccgccgccgccgcccccgtcgccgccgccgccgccgcggggcccgagcccgcc
gccgccccgcccgccgccggccccggagccgccaagcccggcccgcccggccccggcccc
ggcaccgcgcaaactttgaatgggagcgccgcgccgcccaccgcgccgcacgccgcacct
gctgtcagcccggtcaacaacgggcccgcgccgccgcccgccgccggctccgtcatccag
gcggcccccgcgcccgcgcccgccgcgccctcgccgcccgccgcgcccgcgcccgccgcg
cccccgccgcccgcgccccccgcgcccgccgcgcccgcccggccgcccggccaccccgcc
gcgcccgcgcccccccgcgcccgccgccgccgccgccgccgcgcagaacggggccggggc
cgccgcgccgccgccgcgcccgccccggtccccgccccggccaccgggggcgccgcgggg
ctcggcgggcagccgggggccggcgcgcccgcgcaggggggcaaagccgagccgcccaag
accgcggggccggcggcgggcgcggcggcggcggcggcgggcgcggcgnngggcggcgtg
ctgctcgggcccgccatgccaggggcgctgcccagccccgccggcgtcccgcagcccgcg
cccgggaccccggcggggctgcccaaaggcgccgtccccgccgccgccgccgccgccgcc
gcgacccccagcctgccccggacgccctcggccaccaccaccgccgggatccgggccacc
ctgacgcccaccgtgctggccccccgactgccgcagccgccgcagaacccgaccaacatc
cagaacttccagctgcccccaggaatggtcctcgtgaggagcgagaatgggcagctgtta
atgattcctcagcaggccctggcccagatgcaggctcaggcccatgcccaggcccagcca
cagagcaccatggctccacgccctgccactcccacaagtgcccctcctgtccagatatcc
accgtacaggctcccgggacacctattattgcacggcaggtgaccccaactaccataatt
aagcaagtgtctcaggctcagacaacggtacagtccactacaaccctgcaacaacgctcc
ccgggggttcagcctcagcttgttctgggtggctctgcccagacagcctctcttgggaca
gcaacagctgttcaaacaggaacacctcagcgaacggtcccaggggccaccaccacctcc
acagctgccacggaaaccatggaaaacgtgaagaaatgcaaaaattttctgtctacgtta
ataaaactggcctcatccggtaaacagtctacagagacagcagctaatgtgaaagaacta
gtgcagaatttactggatggaaaaatcgaagccgaagattttactagcaggttataccga
gaacttaattcttcacctcaaccttaccttgtgcctttcctgaagaggagcttacccgcc
ttgagacagctgactcccgactccgcggcctttatccagcagagccagcagcagccgcca
ccagcctcgcaggccaccacggccctcacagctgtggtgctgagcagctcggtgcagcgc
acagccgggaagacggctgcctcagtgaccagcgccctccagccccctgtcatcagcctc
acccaacccacacaggtgatccagcagccccccaagcctggagccctgatccggcccccg
caggtgaccttgacacagacacccatggtcgcattgcggcagcctcacaaccggatcatg
ctcaccacacctcagcagatccaactgaaccagctgcagccagtccctgtggtgaaaccc
accgtgttacctggaaccaaagccctttccactgtctcggcacaagcagcagctgcacag
aagaacaagctcaaggagcccgggggaggctcgtttcgggatgatgatgacatcaatgat
gttgcatcgatggctggagtaaacctgtcggaagaaagtgcaagaatactggccacgaac
tctgagttggtggggacgctgacccggtcctgtaaggatgacaccttcctactccctgca
cctttgcaaaggaggatgttggaaataggtaaaaagcatggcatcacggaattgcaccca
gacgtagtaagttacgtgtcccacgccacacagcagaggctacagaatcttgtagaaaaa
atatctgaaacggctcagcaaaaaaacttctcttacaaggatgatgacaggtatgaacag
gcaagtgatgtccgggctcagctcaagttttttgagcaacttgaccagattgaaaagcag
aggaaagatgagcaagagagggagatcctgatgcgggcagccaagtctcgatccagacaa
gaagatccagagcaattaaggttgaaacagaaggcaaaagagatgcagcagcaggagctg
gcacaaatgcgacagcgggatgccaacctcacagcactcgcggccattgggcccaggaaa
aagaggaaagtggactgtgcggggccaggatcgggagcagagggctcgggcccgggcacg
gcagtcccaggcagctccggagtggggacccccaggcagttcacgcggcaaagaatcaca
cgggtcaacctcagggacctcatattttgtttagaaaatgagcgcgagacaagccattca
ctgttgctctacaaagcattccttaagtaa
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integrated database retrieval system
