Perognathus longimembris pacificus (Pacific pocket mouse): 125353982
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Entry
125353982 CDS
T08928
Symbol
Prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125353982 (Prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125353982 (Prpf6)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125353982 (Prpf6)
Complex C
U5 SnRNP specific factors
125353982 (Prpf6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
ARM_TT21_2nd
FAT
ARM_TT21_C
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
125353982
NCBI-ProteinID:
XP_048205738
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All DBs
Position
6:86563242..86618606
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQELCEEALKHYEDFPKLWMMKGQIEE
QGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEDVRKR
CENAEPRHGELWCTVSKDIANWQKKIGEILVLVAARIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcttgggcatgcccgctccgctcggatacgtgccgggg
ctgggccggggtgccactggcttcaccactcggtcagatattgggcctgctcgggatgca
aatgatcctgtggatgatcgccatgcgccaccaggcaagaggactgtgggggaccagatg
aagaaaaaccaggcagctgatgatgatgatgaggatctaaatgacactaactatgatgag
tttaatggctatgctggaagcctcttctcaagtgggccttacgaaaaagatgatgaggag
gcagatgctatttatgcagctctggataaaaggatggatgaaagaagaaaagaaagaagg
gagcaaagagagaaagaagagattgagaaataccgaatggaacgtcctaaaatccagcag
cagttttctgatctcaagaggaagttggcagaagtcacagaagaagagtggctgagcatc
ccagaggttggcgatgccagaaacaaacgccaacggaatccacgctatgagaagctgacc
cctgtgcctgatagtttttttgccaaacatttacagactggggagaaccacacttctgtg
gatcctcgacaaactcaatttggaggtctgaacactccatacccaggtggcttgaacact
ccatacccaggtggtatgacacctggtttgatgacacctggtactggggagctggacatg
aggaaaattggccaagcaagaaatactctgatggacatgaggctgagccaggtgtctgac
tcggtgagtgggcagactgtcgtggaccccaaaggctatctgacggatctaaactctatg
atccctactcatggaggggacatcaatgacatcaagaaggcacgactgctcctcaagtct
gttcgggagacaaaccctcatcatcctccagcttggatagcttcagctcgcctggaagaa
gtcactgggaagctgcaagtggctcggaaccttattatgaaaggaacagagatgtgcccc
aagagtgaagatgtctggctagaagcagccaggttgcaacctggggacacagctaaggct
gtggtggcccaggctgtccgccatctccctcagtctgttaggatttacatcagagcagca
gagctggaaacagatattcgagcaaagaagcgggttcttcggaaagcccttgagcatgtt
ccaaactcagttcgcttgtggaaagcagctgttgaactagaagagcctgaagatgctaga
atcatgctcagcagagctgtggagtgctgccctaccagtgtggagctctggcttgctctg
gcaaggctggagacttatgaaaatgcccgtaaggtcttgaataaagctcgtgagaacatt
cctacagaccggcacatctggatcacagctgccaaacttgaggaagccaacgggaacaca
cagatggtggagaagatcattgaccgggccattacatccttacgggctaatggtgtggaa
attaatcgtgagcagtggatccaggatgctgaagagtgtgacagggcaggaagtgtggct
acctgccaggctgtcatgcgagctgtgattgggattgggattgaagaagaagatcggaag
cacacatggatggaagatgctgatagttgtgtggcccataatgctctagagtgtgcacga
gccatctatgcctatgccctgcaagtgtttcccagcaaaaagagtgtgtggctacgagct
gcatactttgagaagaaccatggcaccagggagtctctggaagcacttctacagagggct
gttgcccactgcccaaaggcagaggtattgtggctcatgggtgccaagtctaagtggcta
gctggggatgtacctgctgcaaggagcatcttggccttggcctttcaggccaaccccaac
agtgaggagatctggctggcggctgtgaaactggagtcagagaacaatgagtatgagcgt
gcccggaggctacttgccaaagcacgtagcagcgcacccactgcccgagtgttcatgaag
tctgtgaagctggagtgggttctagggaatattgaagctgcgcaagagctgtgtgaagag
gccttgaagcactatgaggactttcccaagctgtggatgatgaaggggcagattgaagag
cagggagagctgatggagaaggctcgagaagcctacaaccagggtttgaagaagtgcccc
cactccacacccctctggctcttgctctcccggcttgaggagaagattgggcagctgacc
cgtgctcgagccattttggagaagtcacgtttgaagaacccaaagaatcctgggctgtgg
ttggagtctgtgaggctggagtatcgtgcagggctgaagaacatcgccaacacactcatg
gccaaagcactccaggagtgtcccaactctggcattctgtggtcagaagctgtcttcctt
gaggcaagaccccagagaaagaccaagagtgtggatgccttgaagaagtgtgagcatgac
ccccatgtactcctagctgtggccaagctgttctggagtgagcgaaagattaccaaggct
cgggagtggttccaccgtacagtaaagattgattcagacctgggggatgcctgggccttc
ttctacaagttcgagctgcagcatggcacagaggagcagcaagaggacgtgagaaagcgc
tgtgagaatgctgagccccgtcacggggaactgtggtgcactgtgtccaaagatatcgcc
aactggcagaagaagattggggagatcctggtactggtggctgcacgcatcaagaacacc
ttctga
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