Perognathus longimembris pacificus (Pacific pocket mouse): 125354378
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Entry
125354378 CDS
T08928
Symbol
Hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125354378 (Hfm1)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125354378 (Hfm1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125354378 (Hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
125354378
NCBI-ProteinID:
XP_048205930
LinkDB
All DBs
Position
7:complement(74804201..74879460)
Genome browser
AA seq
1436 aa
AA seq
DB search
MLESNDYMYSVDNLFFKTPDEVENFPDNENSLDWFLPPAPLITDIPDIQELEEEIESHKL
LGQEKRPQMLTSNLKITNDYANYISPRQSMQFSSNKCELDNLNLGGTGNGNLSHIAGKMT
YGSSQKYKSHVGIEIAPFEKNVLGEMELVSIAENKGEGTSAFRKRLFKICENVHESTHPS
DSAYLHSDIGSVNIVQREMNKGKSWNCGSNNEKSQYSANMLTADDAFSASETGEDILKLS
SFSILSQPHDIRGVTKNSLNSLKSVAEIPAKFRSIFKGFPYFNYIQSKAFDDLLYTDRNF
VICAPTSSGKTVVFELAITRLLMEAPLPWLNIKIVYLAPIKALCSQRFDDWKEKFGPLGL
NCKQLTGDTVMDDLFEIQHANIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDE
NRGPTLEVVVSRMKTLQSLSQPLQNTSTIIPVRFVAVSATIPNAEDIAEWLSDGERPAVC
LKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKISSVIRAYSDQKPTLVFCATRKG
VQQAASVLVKDSKFIITMEQRQRLQKYAYSIRDSKLKDILIYGIAYHHAGLELSDRKAIE
GAFVAGDLRVLFTTSTLAMGVNLPAHLVIIKSTMHYAGGMFEEYSETDILQMIGRAGRPQ
FDTTATAVIMTRLSTRDKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWI
RSTLLYIRALKNPSHYGFKSGLNKEGIEAKLQELCLKNLNDLSSLDLIKMDGDVNFKPTE
SGRLMAWYYITFETVKKFCTISGKETLSDLVTMIASCNEFLDVQLRINEKKTLNTLNKSP
NRITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRIARWLSDFV
AAQEKRFAVLLNSLILAKCFRCKLWENSLYVSKQLEKIGITLSNAMVNAGLTSFKKIEST
DPRELELILSRHPPFGTQIKEAVMYLPKYELEVEQIARYSNMMAEILVTLTLRNFEQLQT
KRTAPDFHYVTLIIGDSDNQVVFKHKIMDSVMLKAGNWVKKIDVKRALISEDLSINLISS
DFVGLDIQQKFTVFYLGPKSFGSQVIMQRKSEADISHSEHPDRSTVVGSCKGMTLCKKPG
NRECNHHCKSKHTCGHDCCKIGVAQKSEVKESAISSYLSDLRNRNAVSSLPPCKRLKLQM
NKSQTVGLKEFDFTPKPSIPSRSRLEYLSLPEWPVIEQRDQNEICGKVQQEPFEYQEREV
LNVNFELGSEVWEDFDDENLIEVSSFLTSTKKTKTSGFGDTPNSSARGSKLPFQKSKRKF
QNTMSNSFVSSYEKPDTYLSDYAVSDLGSSSMTQLPEQIGDANTIPLHERKQDLSPVFER
LCFTQSKKIPNSCNLKKADFLIQNSESKKGMDFSYYHPDDAAGEMKTFLGIFDDIL
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgctggaatcaaatgactacatgtattctgtggataatttgtttttcaaaaccccagat
gaagttgaaaattttccagacaatgaaaactcattggattggtttcttcctcctgctcca
ttgattacagatattcctgatatccaggaattggaggaagaaatagaaagccataaacta
ttaggtcaagaaaagagaccacaaatgttaacatcaaatttaaagattactaatgactat
gcaaattacatttcaccaaggcaaagcatgcagttttcctctaataaatgtgaactagat
aatctaaatttaggaggaacaggtaatggaaacttatcacatattgctggcaaaatgact
tatggttcttctcagaaatataaaagtcacgtgggcattgaaattgcaccttttgaaaaa
aatgtacttggtgaaatggaattagtcagtattgcagaaaataaaggagaaggcacatca
gcatttcgaaaaagattatttaaaatttgtgaaaatgtgcatgaaagtactcatcccagt
gacagtgcatacttgcattctgacattggctcagtgaacattgtccaaagagaaatgaac
aaggggaaatcatggaactgtggaagtaataacgagaagtctcaatattctgcaaacatg
cttacagcagatgatgctttttctgcttctgaaactggagaagatatattgaaattatca
tctttttcaattctatcccagcctcatgatattcgaggtgtgaccaaaaatagcttaaat
tctttgaagtctgttgcagaaattccggcaaaattcagaagtattttcaaaggattccct
tacttcaattatatacagtccaaagcctttgatgatcttctttacaccgatagaaatttt
gtgatttgtgctccaactagttctgggaaaactgtagtgtttgaactagctatcacaaga
ttgctaatggaagcaccattaccatggctaaacattaaaattgtttatctggcaccgata
aaagccctgtgtagtcagcgttttgatgactggaaagaaaaatttggaccactgggactg
aattgtaaacaactcactggagatacagtaatggatgacctatttgagattcagcatgct
aatattattatgacaacaccggaaaaatgggacagcatgactagaaaatggagagacaac
tctttggtccaactggttcgactatttctcattgatgaggtacatattgtaaaagatgaa
aatcgtggtccaactcttgaagttgtagttagcagaatgaaaactctacagtctttatct
cagcctttgcaaaataccagcactattattccagtgagatttgtggctgtatctgcaaca
attccaaatgctgaggatattgcagaatggctttcagatggtgaaagacctgctgtatgt
ctaaaaatggatgagagccacagacctgtgaaacttcagaaagtggtccttggatttcct
tgcagtagtaaccaaactgaatttaagtttgatttgacactaaactacaaaatttccagt
gttataagagcatactctgatcagaaaccaacacttgtgttttgtgcaacaaggaaaggt
gtgcaacaggctgcttctgttcttgtgaaagattctaaatttattataactatggaacag
agacaaaggttacaaaagtatgcatattctataagagattcaaaactgaaagatatctta
atatatggtattgcttatcatcatgctggtctggagctgtcagatagaaaagcaattgaa
ggagcatttgttgctggagatctacgagttctttttaccaccagtacactagctatggga
gtaaacttgcctgctcacttggtaattatcaaatctacaatgcattatgctggaggaatg
tttgaagagtacagtgaaacagatattctacagatgattggtagagctggccgacctcag
tttgacactacagctactgcagttattatgactcggttaagtaccagagacaagtacatt
caaatgttagcgtgtagtgacactgtagagagcagtttacacagacatcttattgaacat
ttaaatgcagagatagtattacatactatcacagatgtgaatattgctttggaatggata
cgatcaaccttgctttatatcagagccttgaaaaacccatctcattatggttttaaatct
ggattgaacaaagaagggattgaagcaaaattacaagaattatgtttgaaaaatcttaat
gacttgtcatccctggacttgataaagatggatggagatgttaatttcaaaccaacagag
tcaggaagattgatggcttggtattatattacatttgagacggtgaagaaattttgtaca
atcagtggaaaagaaactttatcagatctggtcacaatgatagccagctgtaatgaattt
ctagatgtacagttaaggataaatgaaaagaaaacactgaatactttgaacaaaagtcca
aatcggataactatcagatttccaatggaaggaaaaattaaaacaagagaaatgaaagtt
aattgtcttattcaggcccagctaggatgcattcctatacaagattttgctttgacacaa
gatacctcgaagattttcagaaatggctcacgaattgcaagatggctgtcagattttgta
gctgctcaagaaaagaggtttgctgtgctattgaatagtctgattttagctaaatgtttt
aggtgtaaactttgggagaactctctgtatgtatccaaacagctggaaaaaattggtata
acattgtcaaatgcaatggtaaatgcaggtttgacttcctttaaaaaaatagaatcaaca
gatccaagagaacttgaactgattttaagtagacaccccccttttggaacacaaataaaa
gaagctgtgatgtatctaccaaagtatgaacttgaagtagaacagattgcaagatacagt
aatatgatggcggaaatattagtaaccctgacgttaagaaactttgaacagctacagact
aaacgaacagcaccagattttcattatgtcaccttaatcataggtgattcagacaatcag
gttgtttttaagcacaaaattatggattctgttatgctgaaagctggaaactgggttaaa
aaaattgatgtgaagagagctctcatatctgaagatcttagcataaatctaattagctct
gattttgttggacttgatattcagcagaagtttacagtcttttacttaggacccaagagc
tttggaagtcaagtaattatgcagagaaagtcagaagcagatatttcccattctgaacat
ccagatagatccactgtagtaggatcttgtaaaggaatgactctctgcaaaaagcctggg
aaccgagaatgcaatcatcactgcaaaagtaaacatacatgtggacatgactgctgtaaa
attggagttgcacagaagtcagaagttaaagaatcagcaatttcttcatatttatctgac
ttaaggaacaggaatgctgtttcatctcttcctccatgtaaacgtctcaaactacagatg
aataaatctcaaactgtgggtcttaaagagtttgattttactccaaaaccttccataccc
agcagatcaaggttagaatatttaagcttacctgaatggcctgtaattgagcagagggat
cagaatgaaatctgtggaaaagttcaacaggaaccatttgaatatcaagagagagaagtt
ttgaatgtgaactttgaattgggaagtgaagtttgggaagattttgatgatgaaaactta
attgaagttagtagctttctaactagtactaagaagacaaaaacatcaggctttggagac
actccgaattcaagtgccaggggcagtaagttacccttccaaaagtcaaagagaaaattt
caaaacacaatgtccaacagttttgtttcatcatatgagaagccagacacctatttatca
gattatgctgtgtctgacttgggttcatcctccatgacacaattaccagaacaaattgga
gatgcaaatactattcccctacatgaaagaaaacaagacttgtcaccagtgttcgagagg
ctgtgctttactcagtccaaaaaaataccaaattcttgtaaccttaagaaagccgacttt
ttaattcaaaatagtgaatctaaaaagggaatggatttcagttattatcatcctgatgat
gcagctggagaaatgaagactttccttggaatatttgatgacattttgtaa
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integrated database retrieval system
