Perognathus longimembris pacificus (Pacific pocket mouse): 125354551
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Entry
125354551 CDS
T08928
Symbol
Clstn1
Name
(RefSeq) LOW QUALITY PROTEIN: calsyntenin-1
KO
K22659
calsyntenin 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125354551 (Clstn1)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Cadherin related
125354551 (Clstn1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
Toxin_R_bind_N
FAM176
EphA2_TM
V_ATPase_I
Cadherin_C_2
UQ_con
SID-1_RNA_chan
PFF1_TM
Zip
Motif
Other DBs
NCBI-GeneID:
125354551
NCBI-ProteinID:
XP_048206155
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All DBs
Position
7:complement(5819559..5889651)
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AA seq
981 aa
AA seq
DB search
MLRRPAPALAPAAGLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCEL
QKDYTFTIQAYDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKATAVEGKQYS
SILRVEAVDADCSPQFSQICSYEIITPDVPFTVDKDGYIKNTEKLNYGKEHQYKLTVTAY
DCGKKRATEDVLVKISIKPTCTPGWQGWSSRIEYEPGTGALAVFPNIHLETCEEPVASVQ
ATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSSSLNWTIGLPTDNGHDSD
QVFEFNGTQAVRIPDGIVSLNPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSL
YVHGCRLIFLLRQDPSEEKKYKPAEFHWKLSQVCDEEWHHFVLNVEFPSVTLYVDGVSHE
PFSVTEDYPLHPTKIETQLVVGACWQEYSGLESDNETEPVTMASAGGDLHMTQFFRGNLA
GLTVRSGKLADKKVIDCLYTCKEGLDLQLPEDSGRGVQIQASPSQSVLTLEGDDVGELDK
AMQHLSYVNSRQFPTPGIRRLRISSTVKCFNEATCIVVPPVEGYVMVLQPEEPKISLSGI
HHFARAASEFESSEGVFLFPELRIISTITREVEPEGDGAEDPTVQESLVSEEIVHDLDTC
EVTVEGEELNPEQESLEVDAARLQQKGIEVSHSDQGVVFTGVDTMASYEEILHLLRYRNW
HTRSLLDRKFKLICSELNGRYLSNEFKVEVNVIHTANPVEHANHMAAQPQFVHPEHRSFV
DLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRSMRDQDTGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEESEDGEEEEDITSAESESSEEEEGGP
GDGQNATRQQQLEWDDSTLSY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccccgcgcccgcgctggccccggccgccgggctgctgctggccgggctg
ctgtgcggtggcggcgtctgggccgcgcgagttaacaagcacaagccatggcttgaacct
acctatcatggaatagttacagagaatgacaacacagtgctgctcgatcctcccctcatc
gctctggataaagatgcccctctgcgttttgcagagagttttgaggtgacagtcaccaaa
gaaggtgagatttgtggctttaaaattcatgggcagaatgtcccttttgatgcagtggta
gtggataagtccacaggtgagggaataattcgctcaaaagagaaactggactgtgagcta
cagaaagactacacattcaccatccaggcctatgactgtggaaaaggacccgatggcacc
ggcgtgaagaaatctcacaaagcaactgtccatatccaggtgaacgatgtgaacgagtat
gctcccgtgtttaaggagaagtcctacaaagcgacagctgtggaggggaagcagtacagc
agcatcctgagggtggaggctgtggacgcagactgttcccctcagttcagccagatctgc
agctatgagatcatcactccagatgtgccctttactgtggacaaagatggttatataaaa
aacacagagaagctaaactatgggaaagagcaccagtacaagctgactgtcactgcatac
gattgtgggaagaagagagccactgaagatgtcctggtgaagatcagcattaagcccacc
tgcactccggggtggcaaggctggagcagtaggattgagtatgagcctggcacaggagct
ttggctgtcttcccaaacatccacctggagacgtgtgaggagccagttgcctcagttcag
gccacggtggaattggagaccagccacatcgggaaaggctgtgaccgagacacctactcc
gagaaatcccttcaccggctctgtggggctgctgctggcactgccgagctgcttccttct
cccagcagctccttgaactggaccatcggcctccctactgacaacggccacgatagtgac
caggtattcgagttcaacggcactcaggcagtgaggatcccagatggcattgtgtccctc
aaccccaaagagccctttacaatttctgtgtggatgcggcacgggccttttggccggaag
aaggagacgattctctgcagttcagacaaaacagatatgaaccgacaccattattcgctc
tatgtccacgggtgcaggcttattttcctcctgcgccaggatccctctgaggaaaagaaa
tacaaacctgcagaattccactggaagctgagtcaggtgtgtgatgaggaatggcaccac
ttcgtcctcaatgtggaattcccgagtgtgactttgtatgtggatggggtttctcatgag
cccttctctgtgactgaggattacccacttcatccaaccaagatcgaaactcagcttgta
gttggtgcttgctggcaagagtattcaggacttgaaagtgacaatgaaactgaacctgtg
actatggcctccgcaggtggcgacctacacatgacccagtttttccgcggcaacctggct
ggtctaacggtccgttctgggaagctggcagataagaaggtgattgactgtctgtacacc
tgcaaagaggggctagacctccagcttcctgaggacagtggccggggtgtgcagatccaa
gccagccccagtcagtcggtgttgaccttggagggagacgatgttggggagttggacaag
gccatgcagcatctgtcctatgtcaactcaaggcagttccccacacctggcatccgaagg
ctccgaatctccagcactgtcaagtgtttcaacgaggccacttgcattgtggttccccca
gtcgaaggctatgtgatggttttgcagcctgaggagcccaagatcagcctgagcggcatc
caccattttgcccgcgcggcttctgagtttgagagctcagaaggcgttttcctcttccct
gagcttcggatcatcagcaccatcacaagagaagtggagcccgaaggggatggggctgag
gaccccacggtgcaagagtccctggtgtctgaggaaatcgtgcatgacctggacacctgt
gaggtcacagtggagggggaggagctgaatcccgagcaggagagcctggaggtggatgcc
gcccgcctgcagcagaagggcatagaagtgagccactccgaccagggcgtggtcttcaca
ggtgtggacaccatggccagctacgaggagattctgcacctcctgcgctatcggaactgg
cataccagatccctgcttgaccggaagttcaagctcatctgctctgagctaaatggccgc
tacctcagcaacgagtttaaggtggaggtgaatgtgatccacacggccaatcctgtggaa
cacgccaaccacatggccgcccagccacagttcgttcaccccgagcaccgctccttcgtg
gatctgtcaggccacaacctggccaatcctcacccgttcgcagttgtccccagtaccgcc
acggtggtgattgtggtgtgtgtcagcttcctggtgttcatgattatcctgggagtgttt
cggatccgggccgcacaccagcgcagcatgcgggaccaggacacggggaaggagaacgag
atggactgggacgactctgccttgaccatcactgtcaaccccatggagacctacgaggac
cagcacagcagtgaggaggaggaggaggaagaggaggaggaggagagcgaggatggggag
gaggaagaggatatcaccagcgctgagtcagagagcagcgaggaggaggagggtggcccg
ggagatggccagaacgccactcggcagcagcagctggaatgggacgactccacactcagc
tactag
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