Perognathus longimembris pacificus (Pacific pocket mouse): 125354729
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Entry
125354729 CDS
T08928
Symbol
Srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
plop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125354729 (Srrm1)
03015 mRNA surveillance pathway
125354729 (Srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125354729 (Srrm1)
03041 Spliceosome [BR:
plop03041
]
125354729 (Srrm1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125354729 (Srrm1)
Spliceosome [BR:
plop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
125354729 (Srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
125354729
NCBI-ProteinID:
XP_048206478
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Position
7:14938186..14968105
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AA seq
918 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSLKIKEPSVQEATS
TSDILKAPKPEPVPEPKEPSPEKNSKKEKEKEKTRQRSRSRSKSRSRTRSRSPSHTRPRR
RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSS
SSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPASPPPKTRHSPTPQQS
NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQ
QRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKHQKET
SPRMQMGKRWQSPVTKSSRRRRSPSPPPTRRRRSPSPAPPPRRRRSPTPPPRRRTPSPPP
RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRPSPSPPPKRRVSHSPPPKQRSP
PATKRRSPSLSSKHRKGPSPNRPAREARSPQPNKRHSPSPRPRAPHTSSSPPPVRRGPSA
SPQRRQSPSPSTRPIRRVSRTPEPKKPKKAASPSPQSIRRVSSSRSVSGSPEPAAKKPPA
PPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHK
KHKKHKKEKAVAPVTAAPVAPAAVVAAATTSAQEEPEALPEPKKETESEAEDNLDDLEKH
LREKALRSMRKAQVSPQS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcgggacaagtgcagaacaggataatcggttcagcaacaaa
cagaagaaactactcaaacagctgaaatttgcagaatgtctagagaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaacgagtaacagaaatcctt
gggtttgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaatcca
gattccaaaatgatgcaaatcaacctgactgggtttttgaatggaaaaaatgctagagaa
tttatgggagaactgtggcctctgctattaagtgcacaagaaaacatcgctggaatccct
tctgctttcctagaactgaagaaagaagaaataaaacagagacaaattgaacaggaaaaa
ttggcatcgatgaaaaagcaagatgaagacaaagataagagggataaagaagaaaaggag
agcagcagagagaaaagggagaggtctcgaagcccaagaagacgcaaatccagatctcct
tcccccagaagacgatcttcccctgtcaggagagagagaaagcgcagtcattctcgatct
ccccgtcacagaaccaagagccggagtccttcccctgctccagaaaagaaggagaaaagt
ccagagcttccagaaccttctttgaaaataaaagaaccttcggtacaagaggccacatct
actagtgacatcctaaaagctcccaagcctgaacctgtaccagaacctaaagaaccttct
ccagaaaaaaattccaaaaaagaaaaggaaaaggaaaagacccgacaaagatctcggtca
cgttccaaatcaagatcccgtacacgttctcgctcaccttctcatactcgaccaagacgg
cgccatagatcccgatcaagatcatactcacctagaaggcgacccagccctaggagacgg
ccttcccctcgaagaagaaccccaccaagacgaatgccgcctccgccaaggcacaggagg
agtaggtctccagggagacgaaggaggcgttcatcagcatccttgtctgggagtagctca
tcgtcttcatcatctcgttcacgatcaccaccaaagaagcctcccaagagaacatccagc
cctcctcgaaaaactcgcaggttatctccttctgcaagtcctccaaggcgaaggcacagg
ccatcacccccagcatctccaccgccaaaaacgcgtcattccccgacacctcagcagtca
aaccgtacaagaaaaagtcgtgtttctgtgtctccagggagaacttcaggtaaagtgaca
aaacataaaggtactgaaaaaagagagtcgccttcaccagcaccaaagcctagaaaagta
gagttgtctgaatcagaagaagataaaggtggcaagatggctgcagccgactctgtacag
cagaggcgccaatacagacgacagaaccagcagtcttcatctgactctggctcttcctcc
tcctcagaagatgagcgacccaagagatcccatgtgaagaatggtgaggtaggcaggcgg
cggagacattccccttcccgaagtgcttctccatctccaagaaagcatcagaaagagact
tcccctcggatgcagatgggaaagcgatggcaatcgccagtgactaaaagtagtagacga
aggagaagtccctctccaccacccaccagaagacgccgttctccttctcctgctcctcct
ccacgtcggcgcaggtctcccacaccaccaccacgccgaaggacaccgtcaccaccacca
cgtcggcgctcaccttccccaagaagatattctcctccaatacagaggcgatactctcct
tctccacctccgaagagaaggacggcctcccctccaccccctcccaaacgaaggccatca
ccatctccaccacctaaacgccgcgtctcccattctccacctcccaaacagagaagcccc
ccagccaccaagagacgatcaccttctttatcttcaaagcataggaaagggccctcccca
aaccgccctgcccgggaagcccggtcaccacagccaaacaaacggcattcgccctcacca
cggcctcgagctccccacacctcctcaagtcctcccccagttcgaagaggaccttctgca
tcaccccaaagaagacagtctccgtctccaagtactaggcctattaggagagtctccaga
actccggaacccaaaaagccaaaaaaggctgcctcacctagcccgcagtctataagaagg
gtctcatcttcccgatctgtttctggatctcctgagccagcagctaaaaagcctcctgca
cctccgtcccctgtccagtctcaatcaccttctacaaactggtcaccagcagtaccagtc
aaaaaggctaagagcccaacaccaagcccatcgccggccaggaattcagaccaagaagga
ggtggaaagaaaaagaagaaaaagaaggacaagaaacacaaaaaggataagaaacacaag
aagcacaaaaagcacaagaaggaaaaggctgtggccccagtgactgcagctcctgtggcc
cctgcagctgttgttgctgctgccaccacttcagcacaggaagagcctgaggcactgcca
gagcccaagaaggagacggagagtgaagctgaagacaaccttgatgacttggaaaagcac
ctgcgagaaaaggccctgcgatccatgcgcaaggctcaagtgtccccgcagtcttag
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