Perognathus longimembris pacificus (Pacific pocket mouse): 125354877
Help
Entry
125354877 CDS
T08928
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151
PI3K-Akt signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04974
Protein digestion and absorption
plop05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125354877 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125354877 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125354877 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125354877 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125354877 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125354877 (Col2a1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125354877 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
125354877
NCBI-ProteinID:
XP_048206776
LinkDB
All DBs
Position
1:55849172..55882571
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQSLVLLTLLVAAVLRCQGQDIQEAGSCLQNGQRYNDKDVWKPEACRICVCDTG
TVLCDDIICEDVKDCLHPEIPFGECCPICPADLATASGKPGPKGQKGEPGDIKDIVGPKG
PPGPQGPVGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGAFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGDNGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGSRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGDAGPPGPSGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGTPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGAPGRAGDPGLQGPAGPPGEKGDTG
DDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEVGERGVKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGTLRQHDVEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKEKKHIWFGENINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccaatcgctggtgctgctgacgctgctggtcgccgcggtc
cttcggtgtcagggccaagatatccaggaggctggcagctgtttgcagaacgggcagagg
tataatgataaagatgtgtggaagcccgaggcctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacgtgaaagactgcctccaccctgagatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactgccagtgggaaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtgggacctaaagga
cctcctggacctcagggacctgtaggtgaacaaggacccagaggcgatcgtggtgacaaa
ggagaaaaaggtccacctggacctcgcggcagagatggagagcctggaacccctggaaat
cctgggccccctggccctccaggccctcctgggcccccgggccttggtgggaactttgct
gcccagatggctggagcatttgatgagaaggctggtggagcccagatgggagtaatgcaa
ggcccaatgggccccatgggacctcgaggacccccaggtcctgctggtgctcctggccct
caaggatttcaagggaaccctggtgagcctggtgagcctggtgtctctggtccaatgggt
ccccgtggtcctcctggcccccctggaaagcctggtgatgatggtgaagctggaaaacct
ggaaaatctggtgaaagaggccctcctggccctcagggtgctcgaggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggcctagacggagctaaggga
gaagctggtgctccaggtgtgaagggtgaaagtggctctcctggtgacaacggctctcca
ggcccaatgggtccccgcggcttgcctggtgagagaggacggaccggtcctgctggtgct
gcgggtgcccggggcaatgatggccagccaggccctgctgggcctccaggtcctgtcggt
cctgctggtggtcctggctttcctggggctcctggtgctaagggtgaagccggccccaca
ggtgcccggggtcctgaaggtgctcaaggtcctcgaggtgaaccaggcaaccctgggtcc
cctgggcctgctggtgcttctggtaaccctggaacagatggcattcctggagctaaagga
tctgctggtgctcctgggatcgctggtgctcctggtttccctggaccccgtggccctccc
ggtcctcaaggtgcaactggtcctctgggccccaagggccagacgggtgaacctggtatt
gctggcttcaagggtgaacagggccccaaaggagaacctggccctgctggcccccaggga
gcccctggtcctgctggtgaagaaggcaaacgaggtgctcgtggagaacctggtggtgct
gggcccattggtccccctggagaaagaggtgctcccggcaaccgaggtttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgagggccaagtggccttgctggc
cccaaaggagccaatggtgaccctggccgtcctggagaacctggccttcctggggcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggaaaaattggtccttctggagct
tctggtgaagatggtcgccctggacctccgggtcctcagggagctcgtgggcagccaggc
gtcatgggtttccctggtcccaagggtgccaatggtgagcctggtaaagctggtgagaag
ggactgcctggtgctcctggtcttaggggtcttcctggtaaagatggcgagacaggtgct
gccgggccccccggccctgctggacctgctggcgaacgaggcgagcagggagctcctggg
ccatctgggttccagggacttccaggccctcctggccctccaggtgaaggtggaaaacca
ggtgaccagggtattcctggtgaagctggagcccctggcctcgtgggtcccaggggtgag
cgaggtttcccaggtgaacgaggctctcccggtgcccagggccttcaaggatcccgtggc
ctccctggcactcctggcactgatggtcccaaaggtgcatctggcccagctggtccccct
ggggctcagggccctccaggtcttcaaggaatgcccggtgagagaggagcagccggtatc
gctggacccaaaggagacaggggtgatgttggtgagaaaggcccagagggagcccctgga
aaggatggtggacgaggtttaactggtcccatcggtccccctggcccagcgggtgccaat
ggcgagaagggagatgctggacctcctgggcccagtggaagtgctggtgctcgtggcgcc
ccgggtgaacgtggggagactggtccccctggacctgctggatttgctggacctcccggt
gctgacggccaacctggtgccaagggtgagcaaggagaagctggacagaaaggtgatgct
ggtactcctggccctcagggtccatctggagcacctggacctcagggtcctactggagtg
actggtcctaaaggagcccgaggagcccaaggacccccaggagccactggattccccgga
gctgctggccgagttggacccccaggctctaatggcaaccctgggccccctggtcctcct
ggtccttctggaaaagatggccctaaaggtgcacgaggagacagcggtgcccctggcaga
gctggtgaccccggcctccaaggtcctgcaggaccccctggcgagaagggagatactgga
gacgatggtccttctggtgctgatggtcctccaggtccccagggtctggctggtcagagg
ggcattgttggtctgcctgggcagcgtggtgagagaggattccctgggctacctggccca
tcgggtgagcctggcaagcagggtgcccctggcgcatctggagaccgaggtcctcctggt
cctgtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagtcct
ggtgctgatggcccccctggcagagatggcgccgctggagtgaagggtgaccgtggtgag
actggtgccctgggggctcctggagcccctggccctcctggttctcctggccctgctggc
ccaactggaaagcagggagacagaggcgaggctggtgcacaaggccccatgggacccgca
ggaccagctggagcccgtggaatccctggcccccaaggcccccgaggtgacaaaggagaa
gctggagaggtcggcgaaaggggagtgaagggacatcgtggcttcactggccttcagggt
cttccgggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctaggggtccacctggtcctgtgggtccctctggcaaagatggtgctaatggaatc
cctggccccattgggcctcctggtcctcgtggacgctcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggtcctccaggtccccctggccctggcattgacatg
tccgcctttgctggcctaggccagagagagaagggccctgaccccctgcagtacatgcga
gctgatcaggcagctggtaccctgagacagcatgacgtggaggtagatgctacactcaag
tcactcaacaaccagattgagagcatccgcagtcctgagggctcccgcaagaatcctgcc
cgcacctgccgcgacctgaaactctgccatccagagtggaagagtggagactactggatt
gaccccaatcagggctgtaccttggatgccatgaaggttttctgcaacatggagacaggc
gagacctgtgtctaccccaacccagccagtgtgcccaagaagaactggtggagcagcaag
agcaaggaaaagaagcacatctggtttggagaaaacatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaatgtccagatgaccttcttacgcctg
ctgtcgaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagccgctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggctgagggcaacagcaggttcacgtacacagccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgtctc
cccatcattgacattgcacccatggacattggagggcccgagcaggaatttggtgtggac
ataggacctgtctgcttcttgtaa
DBGET
integrated database retrieval system
