Perognathus longimembris pacificus (Pacific pocket mouse): 125355181
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Entry
125355181 CDS
T08928
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
plop05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125355181 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125355181 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125355181 (Ndc1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125355181 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
125355181
NCBI-ProteinID:
XP_048207315
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All DBs
Position
7:complement(35818358..35868595)
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AA seq
674 aa
AA seq
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MAVPASGPCAGGSRDILWRVLGWRIVASIVWSVLLLPICTTVFIIFNSLDLFHPIQWLSD
SVNDLCSSYVIFYLLLLSVVIVIISIFNVEFYAVVPSVPCSRLALIGRIIHPQQLMHSFV
HAALGMVTAWCAAVINKGQYSFLVVPCTKTESLDSPPAQTCLNEYHLFFLLAGAFMGYSY
SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCIVYYFLGYIPKA
WISTAMNLHIDEHFHRPLDTVSGLLNLSLLYHIWLCGVFLLITWYISWILFKIYATEAHV
FPVQPPFAGDSDECLPKVLSSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
NWTAISRECLNLLNDMTQKLILYQEAAATNGRFSSSYPVESKKLNSSEETALQTPKPSQT
PRSSAPPSAKTALFSSKLPTPDTSSTFGSPLGSNVVNRMAGIFDANICYASPQSPLLIRR
GPRLWTSASDQQMSGFSNLPPCTSVGTDGKAVRQPNVVYSWIQNKREQIKNFLSKRVLIM
YFFSKHPEASIQAVFLDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNALLTLQE
AVDKYFKLPHASSKPPRISGSLVDRSYKTLRFAFRASLKTAIYRITTTFGDHLNAVQASA
EHQKRLQQFLEFKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcctgcgagtgggccctgcgccggcgggtcgcgggacattctgtggcgcgtt
ttgggctggaggatagtagcaagtattgtttggtcagtgttgcttctgcccatctgtacc
acagtctttataatcttcaacagccttgatctatttcatcctatacagtggctatcagat
tctgttaatgatctgtgtagttcgtatgtgatcttttatctcctgctgctgtcggttgta
atagtaataataagtattttcaatgtggagttctatgcagttgtgccttctgttccctgc
tccagactggccctgataggaaggatcattcatcctcaacaactcatgcactcatttgtg
catgctgccttggggatggtgacagcttggtgtgctgctgtgatcaacaagggccagtac
agttttctcgtggttccctgcactaaaactgaaagcttagacagccctcctgcgcagacc
tgcttaaatgaatatcatctgttttttttactggctggagcattcatgggctatagctat
agcctcctgtactttgttaacaacatgaactaccttccgtttcccatcattcagcaatac
aagttcttgcggttcaggagatctctgctcttattagttaagcatagttgtgtggaatca
ctgttcctggttagaaatttttgcattgtgtattattttcttggctatatacccaaagct
tggattagcactgctatgaaccttcacatagatgagcactttcacaggcctcttgacaca
gtgagtggcctcttgaacctctcattactctaccacatctggctttgtggtgtcttcctc
ctgataacttggtacatctcatggatactcttcaaaatctatgccacagaggctcatgtg
tttcctgttcagccaccatttgcaggagactcagatgaatgcctcccgaaagttttaagt
agcaatcctcccctcattataaagtatttagccttgcaggacctgatgttgctttctcaa
tattctccttctcgaagacaagaagtttttagccttagccaaccaggtgggcatcctcat
aattggactgccatttctagagagtgtttgaatcttttaaatgatatgactcagaaactg
attctctaccaagaagctgctgctacaaatgggaggttttcttcatcgtacccagtggaa
tctaagaaactgaattcctcagaagaaactgctcttcagacgccaaaacctagccaaaca
cctcgatcatcagcaccaccgtcagctaaaactgcactgttttcttcaaaattacctaca
cctgatacttcaagtacctttgggtctcctttgggctctaatgtggtgaatcgaatggct
gggatttttgatgcaaatatttgctatgcatcaccacaaagtcctctgctaataagaaga
ggaccaagattatggacttctgcttctgatcagcaaatgtctggattttcaaatctacct
ccatgcacctctgttggtactgatggtaaagcagtgagacagcccaatgtggtctattca
tggatacagaataagcgtgaacagattaagaatttcttgtccaaacgggtgctgataatg
tattttttcagtaagcatccagaggcctccattcaagctgtttttttagatgcccaaatg
catatttgggcattagaaggtctgtctcacttagtagcagcgtcattcacagaagataga
tttggagttgttcagactacactaccagctatccttaatgccttattgacactgcaagag
gcagttgacaagtacttcaagcttcctcatgcatctagtaaaccaccccggatttctgga
agccttgtggacaggtcttacaaaacattaagatttgcatttagagcatcactaaaaact
gctatctatcgaataactactacatttggtgaccatctcaatgctgtgcaagcatctgca
gaacatcagaaaagacttcaacagttcttggagttcaaagaatag
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