Perognathus longimembris pacificus (Pacific pocket mouse): 125355592
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Entry
125355592 CDS
T08928
Symbol
Trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125355592 (Trmt13)
Enzymes [BR:
plop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
125355592 (Trmt13)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
125355592 (Trmt13)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
125355592
NCBI-ProteinID:
XP_048207992
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All DBs
Position
7:81549852..81566743
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AA seq
482 aa
AA seq
DB search
MMAASPPRGCAAGFPAEGRCGYYVEKKRRFCRMVAAAGKRFCGEHSGAAEEENARKRILC
PLDPKHTVYEDQLAKHLKKCNAREKPKPDFFVQDINAGLKDETEIPEQLVPISSLSEEQL
GNLINKLRKASEGLSSTLNDHIMSHPALQDAINDPRNGDSATKHLKQQASILGNIEKLKL
LGPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSMFERLQ
IDIQHLCLNKIPVLREGKLPVVGIGKHLCGVATDLALRCLVETYAACYEEKNEEPLAKRI
KNDKTENDMNTLAKEGNENNVPKKWPPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAV
EFHYFQRMSSWATCGMRKAPLEDTNITTKSKDHQNDDSKEHDDGEYRITDDSTDNLPGIL
TVEEKKKIGHLCKLLIDQGRVQYLEQKGFSPALQNYVDPLVSLENVLLTALPIHSSSPQI
TG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcgtctccgccgagggggtgcgctgctgggtttccggctgaggggagatgc
gggtactatgtggaaaagaagaggcggttctgcaggatggtggcggccgcggggaagagg
ttctgcggcgagcactccggcgctgcggaggaagaaaatgctcggaaaagaatcctgtgt
cctttagatccaaaacacacagtatatgaagatcaactagcaaagcatttgaaaaaatgt
aatgcaagagagaagccaaaacctgatttctttgttcaagatattaatgcaggcttaaaa
gatgagacagaaatacctgaacaattagttccaatatcttctctatctgaagagcagttg
ggaaacttaattaacaaattgagaaaagcaagtgaaggtttgagttccacacttaatgat
cacatcatgtcgcacccagctttacaggatgccattaatgaccctagaaatggggactct
gcaaccaagcacttgaaacagcaggcttctattttaggtaacattgaaaaattaaagtta
cttggtccaagaagatgctttgttgaatttggagcaggcaagggaaaattatctcattgg
gttgatattgccttaaaagatgctgagaaagttcacttcatcctcgtggaaaaagtgact
acaagattcaaggtggatggtaaacacagaaagaaaaattcaatgtttgaaagacttcaa
attgatattcaacacttatgtttgaataagattcctgtgctaagagaaggaaaactgcct
gtggtaggaattggaaaacatctgtgtggtgtggcaacagatcttgcattacgatgtttg
gttgaaacttatgctgcctgttatgaggaaaagaatgaagaacctttagccaaacgtata
aagaatgataaaacagaaaatgatatgaacactttggccaaggaaggaaatgaaaataat
gtcccaaagaagtggcctcctgtggctggcatcgttattgcactctgttgtcaccatagg
tgtgattggagacattatgtgggcaaagaatattttagggccctaggccttggagcagta
gaattccattatttccagcgaatgagtagttgggcaacttgtgggatgagaaaagcacct
ttggaagacacaaatattactacaaagagcaaagatcatcaaaatgatgatagcaaagag
catgatgatggagaatacagaatcacagatgacagcactgataatttgcctgggattctc
actgttgaagaaaagaagaagatagggcatctctgtaaattgctgattgaccaaggccga
gtccagtatttagagcaaaagggtttcagtcctgctttacagaactatgtagaccctttg
gtgtctctggaaaatgtattgttaacagccttaccaattcattcttcttcaccacaaata
actggttaa
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