Perognathus longimembris pacificus (Pacific pocket mouse): 125356218
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Entry
125356218 CDS
T08928
Symbol
Usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125356218 (Usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125356218 (Usp39)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
125356218 (Usp39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
125356218
NCBI-ProteinID:
XP_048208524
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Position
8:complement(13729064..13751776)
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AA seq
565 aa
AA seq
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MSSRSKRESRGSGRGKRESESRGSSGRVKRERDREREPEAAGSRGSPVRVKREVEPASAR
EAPVPAAPAVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
MITLSEAYIQIWKRRDNDETNQQGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccagccggtcgaagcgggagtctcgcggttccggccgcgggaagcgcgagtccgag
tcgcggggcagctcgggtcgtgtcaagcgggagcgagaccgggagcgggagcctgaggcg
gcgggctcccggggcagcccggtgcgcgtgaagcgcgaggtcgagccggcgagcgcgcgc
gaggcgccggtgcccgcggctccggccgtgcgggtgaagcgggagcgcgaggccgacgag
gactcggagcccgagcgggaggtgcgagcaaagaatggccgtgttgattctgaggaccgg
aggagccgccactgcccatacttggataccattaacaggagtgtgctggactttgacttt
gagaagctgtgttctatttctctctcacatatcaatgcttatgcctgtttggtgtgtggg
aaatactttcaaggccgaggtttgaagtctcatgcctacatacacagcgtccaattcagc
caccatgtcttcctcaatctccataccctcaagttttattgccttccagataactatgaa
atcattgattcctccctggaggatatcacgtatgtgttgaaaccaacattcacaaagcaa
caaattgcaaacttagacaagcaagccaaattgtcccgggcatatgatggtaccacctac
ttgccaggtattgtgggactgaataacataaaggccaatgactatgccaacgctgttctt
caggccctgtcaaatgtccctcctctccgcaactacttcctggaagaagacaattataag
aacattaagcgtcctccaggggatatcatgttcttactggttcagcggtttggagaactg
atgagaaagctgtggaacccacgaaatttcaaggcacatgtctctccccatgagatgctt
caagctgttgttctttgtagcaagaagacttttcagattaccaaacaaggggatggagtt
gacttcctgtcttggtttctgaatgctctgcactcagctcttgggggtacaaagaagaaa
aagaagactattgtgactgatgttttccaggggtccatgaggatcttcaccaaaaagctt
ccccaccctgatctgccagcagaagaaaaagagcagctgctccataatgatgagtaccag
gagacaatggtagagtccaccttcatgtacctgacattggaccttcctactgccccgctc
tataaggatgaaaaggagcagctcattatcccccaggtgccactcttcaacatcctggcc
aagttcaacggcatcactgagaaggaatataagacttacaaagagaactttctgaagcgc
ttccaactcaccaaactgcctccatatctaatcttttgtatcaagagattcactaagaac
aacttctttgtggagaagaatccaaccattgtcaacttccctatcacaaatgtggatctg
agagaatacttgtctgaagaagtacaagcggttcacaagaataccacctatgacctcatt
gccaacatcgtgcatgatggcaagccctctgaaggctcctaccggatccatgtgctccac
cacgggactggcaaatggtatgaattacaagacctccaggtgactgacatcctgccccag
atgatcacgctgtccgaggcctacattcagatttggaagaggcgcgataatgatgaaacc
aaccagcagggggcttga
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