Perognathus longimembris pacificus (Pacific pocket mouse): 125356434
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Entry
125356434 CDS
T08928
Symbol
Ccdc88a
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
plop03037
]
125356434 (Ccdc88a)
Cilium and associated proteins [BR:
plop03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
125356434 (Ccdc88a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
APG6_N
HOOK
Motif
Other DBs
NCBI-GeneID:
125356434
NCBI-ProteinID:
XP_048208856
LinkDB
All DBs
Position
8:39218369..39327237
Genome browser
AA seq
1873 aa
AA seq
DB search
MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVFLNQVMLQINPKSE
SQRVNKKVNNDASLRIHNLSILVKQIKFYYQETLQQLIMMSLPNVLVIGKNPFSEQGTEE
VKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVSD
MSQEDIEPLLKNMALHLKRLIDERDEHSETIVELSEERDGLHFLPHGTSSAQSPCGSPGM
KRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEVEFKRLQQENMNLLS
DARSARMYRDELDALREKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETK
TMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK
QSMDESLHLGWELEQISRTSELSEAPQKSLSHEVSELTSSRLLKLEMENQSLTKTVEELR
STMDSVEDSTSKILKIEKENQRLNKKVEVLENEIIQEKQSLQNCQNLSKDLMKEKAQLEK
TIETLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETS
SKLSKIEFEKRQIRKELEHYKEKGERAEELESELQHLGKENELLQKKITNLKITCEKIEA
LERENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKGASMKM
AQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ
QLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKR
LRQQAEIKDITLEENNVKIGNLEKENKTLFKEIGVYKESCIRLKELEKENKELVKRATID
VKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESK
LESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSS
PLVSREDNKWERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQ
AQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENE
SIIKEREDLKSLYDSLLKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHKDLED
RYNQLLKQKGQLEDLEKTLKIEQEKMLLENKNHETVAAEYKKLCGENDRLNYTYSQLLKE
TEILQTDHKNLKSLLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPHQDSQ
DSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDKDKMKACYRRSMSMNDLVQSMV
LAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTTAINFSTVNSSAGFRSKQLVNNKDT
TSFEDISPQGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKAGAVNNQSRPQ
SHSSGEFSLLHDHETWSSSGSSPIQYLKRQTRSSPVLQHKMPETLESRGLHKIKTGSPGS
EVVTLQQFLEESNKLTSIQLKSSSQENLLDEVMKSLSVSSDFLGKDKPVSCGLSRSVSGK
TPGDFYDRRTTKPEFVRPGPRKTEDAYFISSTGKSTPGTHGKIKLVKETSLSRQSKDSNP
YATLPRASSVISTAEGTTRRTSIHDFLAKDSRLPLSIDSPLPTADSNITAASNVDKVQES
RNSKSRSREQQSS
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaatttttacccccctattggagcagttcatgaccagccccttggtcact
tgggtcaaaacgtttggacctctggctgcaggaaatgggaccaatctggatgaatatgtg
gctttggtggatggagtcttcctgaaccaggtcatgcttcaaattaatcctaaatcggag
agtcagagagttaataaaaaagtcaacaatgatgcatcactcagaattcataatttatcc
attttggtgaaacagataaaattttattaccaggagactttgcagcaattgattatgatg
tctttgccaaatgtcttggttattggcaaaaatccattttctgaacaaggcactgaagaa
gttaaaaaactgcttttgctcttactgggttgtgcagttcagtgtcagaaaaaagaagag
tttattgaaagaattcaaggattagattttgatacaaaagcagcagttgccgcacatatt
caagaggtaacccacaatcaggaaaatgtgtttgatctgcaatggatggaagtgtcagat
atgtctcaggaggatatagaaccactcttgaaaaatatggcattgcatctgaaaagactt
atagatgagagagatgaacattcagagactatcgtagaactctctgaagagcgagatgga
cttcattttctaccccatggcacttcatctgcacagtcaccctgtggttctccaggcatg
aagcgaacagaaagtcgacagcatctgtcagtggaactggcagatgctaaggctaagata
agaaggcttaggcaggaactggaggaaaagactgaacagttgttggactgcaaacaagaa
cttgaacaaatggaagtagaatttaaaaggctacaacaagagaacatgaatttgctttcg
gatgctcgttctgctagaatgtaccgagatgaattggatgcacttcgagagaaggcagta
agagttgataaacttgaaagtgaagtcagtagatataaagagagactacatgatattgaa
ttttataaagcaagagttgaggaattaaaagaagacaatcaagttttattagaaacaaaa
actatgttggaagatcaactagaaggaactcgagctcgttctgacaaattacatgaatta
gaaaaagagaatttacaactaaaggctaaactgcatgatatggaaatggaacgagacatg
gatagaaaaaagattgaagaattaatggaagaaaatatgactttagaaatggcccagaaa
caaagtatggatgaatcattacatcttggctgggagctggaacagatatccagaactagt
gaactttctgaagcaccacagaaatccttgagccatgaagtaagtgaattgacatcaagt
agattattaaagttggagatggaaaaccagagtttgacaaaaactgtagaagagcttcgt
agtactatggattctgtagaagacagcacttccaaaatactgaaaatagaaaaagaaaat
caaagactgaataaaaaggttgaagttcttgaaaatgagattattcaagaaaagcaaagt
cttcaaaattgtcaaaatttaagcaaagatctaatgaaggaaaaagctcagcttgaaaaa
acaattgaaacacttagagaaaattcagagagacagattaaaatattggaacaggaaaat
gaacatctgaatcaaacagtgtcttctttaaggcagcgttctcagatcagtgctgaagca
agggtaaaagacattgaaaaagaaaataaaattctccacgaatctatcaaggaaacaagt
agcaagctaagcaagattgaatttgaaaaaaggcaaattagaaaagaattagaacattat
aaagaaaaaggagaacgagcagaagaacttgaaagtgagttgcagcatcttggaaaagaa
aatgaattgttacagaaaaagataaccaatttaaaaattacttgtgaaaaaattgaggcc
ttagaacgagaaaattcagagctagaaagagaaaatagaaaattaaaaaaaacattggat
agcttcaaaaaccttacttttcagttagaatccttagaaaaagaaaattcccaacttgat
gaggaaaatttagaacttcgacgaaatgtggaatctttgaagggtgcaagtatgaaaatg
gctcagctacaattagaaaacaaagagttagaaagtgagaaagaacaacttaagaaaggt
ttggagctcatgaaagcatctttcaagaaaacagaacgtttggaagttagctaccaggga
ttagatacagaaaaccaaaggctacagaaagctttagaaaatagcaataaaaaaatccaa
caattagaaagtgaactacaagacttagagatggaaaatcaaacattgcaaaagaaccta
gaagaattgaaaatatctagcaagagattagaacagctagaaaaagaaaataaatcatta
gagcaggaaacatctcaactggaaaaggataagaaacaattggagaaggaaaacaagaga
ctccgacaacaagcagaaataaaagatatcacattagaagaaaataatgtgaagattgga
aatttggaaaaagaaaacaaaactctttttaaagaaattggtgtatacaaagaatcttgt
attcgtctcaaagaattagaaaaggaaaataaagagcttgtgaaaagagcaactattgat
gtaaaaactttggttacattacgtgaggatttggtcagtgaaaaattgaagactcaacaa
atgaacaatgatcttgaaaaattaactcatgagcttgagaagatagggttaaataaagaa
cgcctcttacatgatgaacaaagtactgatgacagtaggtacaaacttttggaatcaaag
ttagaatctactcttaagaaatctcttgaaataaaagaagaaaaaattgctgctttagaa
gctcgattagaagaatccacaaattataaccagcaattgcgacaagaacttaaaacagtg
aaaaaaaattacgaagcactcaaacagagacaagatgaggaaaggatggtgcagagctct
cctctagtatccagagaagataacaaatgggaacgagaaagtcaagaaacaactagagag
cttcttaaagttaaagacagattaattgaagtagagagaaataatgctacattgcaagca
gagaagcaagcattgaaaacccaactgaagcaactcgaaacccagaacaataatttacag
gcccagattcttgcacttcagaggcagactgtgtcattacaggaacagaataccactctt
caaacccagaatgccaagcttcaggttgaaaattccacccttaattcccagagtacctca
cttatgaaccagaatgcacaactcctaatccagcagtcatccttagaaaatgaaaatgaa
tctataatcaaagaacgagaagacttgaaatctctctatgattctctgctcaaagatcat
gagaagctggaacttcttcatgaacgtcaggcctcagaatatgaatctctcatctctaaa
catggaactctgaaatctgcccacaaaaatcttgaagtggaacataaagaccttgaagac
cgttacaatcagttgttaaaacagaaaggacaattggaagatttggaaaaaacactcaaa
atagaacaggaaaaaatgcttcttgaaaacaaaaatcatgagacagtagccgcagaatac
aagaaactttgtggtgaaaatgataggttaaattatacatatagtcagcttttaaaagag
actgaaattttacaaactgaccataaaaatttgaaaagcctcctaaataattctaaactg
gaacaaacaagattagaagctgaattttcgaagcttaaggaacaataccaacagctggat
atcacatccaccaagctaaataaccagtgtgagttgctcagccaacttaaaggaaacttg
gaagaagaaaatcgacatctactagatcaaattcagacactaatgcttcagaatagaaca
ctattggaacaaaatatggaaagcaaggatctttttcatgtagaacaaagacagtacatt
gataagttaaatgaattaagacgacagaaggagaaattagaagagaaaattatggatcaa
tacaagttttatgacccatctcctcctagaaggagaggcaactggattaccctaaaaatg
agaaaattgataaagtccaagaaagatattaaccgggaacgtcagaaatctctaacatta
acacctacccgctcagattccagtgaaggatttcttcaactgccccatcaagatagtcaa
gatagttcttcagtagggtcaaattctttagaagatggacaaactcttgggaccaagaaa
agcagcatggttgcactgaaaagactgccctttttgaggaacagaccgaaggataaagac
aaaatgaaggcctgctaccgtcgttccatgtccatgaatgacctggtgcagtccatggtc
ctagcaggaggacagtggacaggtagtactgagaatttggaggttcctgatgatatttca
acgggtaaaaggagaaaagaattgggagctatggccttctctactacagccatcaacttt
tcaactgtcaactcttctgcaggcttcagatccaagcagttggttaataataaagatact
acatcctttgaagacataagtccacaaggtattagtgatgattctagtacgggatcaaga
gttcatgcgtcaagaccagccagccttgatagtggcagaacatccactagcaatagcaat
aacaatgcttcactccatgaagtcaaagcaggtgcagttaataaccaaagcaggccacaa
agccacagcagtggagaatttagcctgcttcatgatcatgagacttggtccagcagtggg
agcagtccaatacagtacttaaaaagacaaactagatcaagtccagtgctccagcacaaa
atgccagaaacactagaaagtcgaggacttcataaaattaaaactggttcccctgggagt
gaagttgttactctacaacagtttttggaagaaagcaacaagcttacctcaatacagcta
aagtcctcaagtcaagagaatcttttagatgaagtaatgaaaagtttatctgtctcttct
gactttttgggaaaagacaagccagttagttgtggtctgtccaggtcagtaagtggaaaa
accccaggggacttctatgacagacggacaactaagcctgagtttgtgagacctggtcct
cgaaagactgaagatgcctacttcattagttctacaggaaaatctacaccaggcactcac
ggaaagataaaattagtaaaagaaacctctctgtcacgacaatcaaaagatagcaatcct
tatgccactttacctcgtgcaagtagtgtgatctctacagctgaaggaacaacacgaagg
acaagcatacatgactttttggccaaggacagtagactgcctttgtcaattgactctcca
ctgcctactgctgatagcaacatcactgcagcgtctaatgtggacaaagtacaagaaagc
agaaattcaaaaagcaggtctagggagcaacaaagctcctaa
DBGET
integrated database retrieval system
