Perognathus longimembris pacificus (Pacific pocket mouse): 125356467
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Entry
125356467 CDS
T08928
Symbol
Msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop01524
Platinum drug resistance
plop03430
Mismatch repair
plop05200
Pathways in cancer
plop05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125356467 (Msh2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125356467 (Msh2)
09162 Cancer: specific types
05210 Colorectal cancer
125356467 (Msh2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
125356467 (Msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125356467 (Msh2)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125356467 (Msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
125356467
NCBI-ProteinID:
XP_048208933
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Position
8:complement(45669480..45723447)
Genome browser
AA seq
935 aa
AA seq
DB search
MAVQPKETLQLEGAAEVGFVRFFEGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVFKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGTSDMSTSIGVMGVKISTVDGQRQVGVGYVDSLQRKLGICEFPD
NDQLSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGRILITERKRADFSTKDICQD
LNRLLKSKKGEQMNSSVLPEMENQIAISSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
DLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGVNQLPNVIRA
LEKHEGRHQVLLLAVFVTPFIELRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLTE
LRGAMNDLEKKMQSTLTKAARDLGLDPGKQIKLDSSGQLGYYFRVTCKEEKVLRNNKTFT
TVDIQKNGVKFTNSELSSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYIEPMQTLNDVLA
QLDAVVSFAHVSNAAPIPYVRPDILEKGQGRIVLKGSRHACVEVQDEVAFIPNDVRFDKE
KQTFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAKISIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEENLTMLYQVKKGVCDQSFGIHVAELANFPKHV
IECAKQKALELEEFQNIGTSPQGRGGMEPAAKKCYLEREQGEKIIQEFLSKVKQVPFTEM
SEENIKIKLKQMKAELIAKNNSFVNELISRIKLTT
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggagacgctccagctggagggtgcggccgaggtcggcttcgtg
cgcttcttcgaaggcatgcccgagaagccgaccaccacggtgcgtctcttcgaccggggc
gacttctacacggcgcacggcgaagacgcgctgctggcggcccgcgaggtgttcaagacc
caaggggtcatcaagtacctgggtccggcaggagcaaagactctgcagagtgttgtgctt
agtaaaatgaactttgagtcttttgtaaaagatcttcttctggttcgtcagtatagagtt
gaagtttttaagaacagagctgggaataaagcatccaaggagaacgattggtatttggca
tttaaggcttctccgggcaatctgtcccagtttgaagatattctctttggtaccagtgac
atgtcaacttccataggtgttatgggtgttaaaatatccacagttgatggtcaaagacag
gttggagttgggtatgttgattctctacaaaggaagctaggaatatgtgagtttcctgat
aatgatcagctctccaatcttgaggctcttctgattcagattggaccaaaagaatgtgtt
ttaccaggaggagagactgctggagacatggggaaactgagacaggttattcagagagga
cgaattctgatcacagaaagaaaaagagctgatttttccacaaaagacatttgccaagac
ctgaaccggttattgaaaagcaaaaagggagaacagatgaatagttctgtcttgccagaa
atggagaatcagattgcaatttcatcattgtctgcagtaatcaagtttttagagctttta
tctgatgattcaaattttggacagtttgaactgactacttttgacttcagccaatacatg
aagttggatattgcagcagttagagcccttaaccttttccagggttctgtggaggataca
acaggctctcagtctttggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctagttaaccagtggattaagcagcctctcatggataagaacagaatagaggagagatta
gatttagtggaggcttttgtagaagatgcagagttaaggcagagtttacaagaagatttg
cttcgtcgattcccagatcttaacagacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttaccgactttatcagggtgtaaatcaactccctaatgttatacgggct
ctggaaaaacatgaaggaagacaccaggtattattgttggcagtttttgtgactccgttt
attgaacttcgttctgatttctccaaatttcaggaaatgatagaaacaactttagatatg
gatcaggtggagaaccacgaatttcttgtaaaaccttcatttgatcctaatctgactgaa
ttaagaggagcaatgaatgacctagaaaagaagatgcagtccacactaacaaaggcagcc
cgagatctgggattggaccctggcaaacagattaaattggattccagtggacagcttgga
tattattttcgtgtaacctgcaaggaagaaaaagtccttcgtaataataagacctttact
acagtagatatccagaagaatggtgttaaatttaccaacagtgaactgtcttctttaaat
gaagagtatactaaaaataaaactgaatatgaagaggcccagaatgccattgtaaaagaa
attgtcaatatctcttcaggttatatagaaccaatgcaaacacttaatgatgtactagct
cagttagatgctgttgtcagctttgctcatgtgtcaaatgcagcacctattccgtatgtc
cgaccagatattttggagaaaggacaaggaagaattgtattgaaaggatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaacgatgtacgctttgataaggaa
aaacagacgttccacatcattactggccccaatatgggaggtaaatcaacatatatccgc
cagactggggtaatagtactcatggctcaaattgggtgttttgtgccctgtgagtcagca
aaaatatccattgtagactgtattttggctcgagttggggctggcgacagtcagttgaaa
ggagtctccacatttatggctgaaatgctagaaactgcttctatcctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacttatgatggcttt
ggcttggcctgggctatatcagagtacattgcaacaaagattggtgctttttgtatgttt
gcaacccatttccatgaacttactgcattggccaatcagataccaactgtgaataatctg
catgttacagcattaaccactgaagagaacttaacaatgctttatcaggtgaagaaaggt
gtctgtgaccaaagttttgggattcatgttgcagaacttgctaatttccccaagcatgta
atagagtgtgccaaacaaaaagccctggaacttgaggagttccagaatataggaacttca
ccacaaggacgtggtggaatggaacccgcagcaaagaagtgctatctggaaagagagcaa
ggtgaaaaaattatccaggagtttctatccaaggtgaaacaagtgccttttactgaaatg
tcagaagaaaacatcaaaataaagctaaaacagatgaaagctgagttgatagcaaagaat
aacagctttgtaaatgaactcatttcgcgaataaagcttactacatga
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