Perognathus longimembris pacificus (Pacific pocket mouse): 125356724
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Entry
125356724 CDS
T08928
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125356724 (Ddx1)
03016 Transfer RNA biogenesis [BR:
plop03016
]
125356724 (Ddx1)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125356724 (Ddx1)
Spliceosome [BR:
plop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125356724 (Ddx1)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125356724 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
125356724
NCBI-ProteinID:
XP_048209357
LinkDB
All DBs
Position
8:complement(69663119..69692204)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGQVKFSKNGKDLGLAFEVPAHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKNDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgctcaagcagtagaagagatg
gactggcttctcccaactgatatccaggctgaatctatcccactgatcttaggaggaggt
gacgtgctgatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
attcagatagtttatgaaactctgaaagaccaacaagaaggcaaaaaaggaaaaacaaca
attaaaactggtgcttcggtgctcaacaaatggcagatgaacccatatgatagagggtct
gcttttgcaattggatcagatggtctttgttgtcaaagcagagaagtaaaggaatggcat
gggtgcagagctaccaaaggattaatgaaagggaaacactactatgaggtgtcctgtcat
gaccaagggctgtgcagagttgggtggtccactatgcaagcctctttagacctaggtact
gacaaatttggattcggatttggtgggacaggaaagaaatcccataataaacaatttgat
aattatggagaggaattcactatgcatgataccattggatgctatctagatatagataaa
ggacaagtcaagttttccaaaaatggaaaagatcttggtctggcatttgaagtcccagca
catatgaaaaatcaagctctctttcccgcctgtgttttgaagaatgctgaactaaaattc
aactttggggaagaagaatttaagtttccacctaaggatggctttgttgctctttccaag
gcaccagatagttatgttgtcaagtcacagcacacaggtaatgcacaagtgacacaaacc
aaatttcttcccaatgctcccaaagctctcattgtcgaaccctccagggaattagctgaa
caaactttgaataatgtcaaacagtttaagaaatatatcgataatcctaagttaagggag
cttctgataattggaggtgttgcggcacgagatcaactctctgttttagataatggggtg
gatattgttgtaggtactccagggagactagatgatttggtgtcaactggaaaactgaac
ttatctcaagtcagattcctggtcctggatgaagctgatgggcttctttctcaaggttac
tctgattttataaataggatgcacagtcagattcctcagattacctctgatggaaagcga
cttcaggtgattgtttgctctgctactttgcattcctttgatgtgaagaagctgtctgag
aagataatgcattttcccacgtgggttgatttaaaaggagaagattctgttcccgatact
gtgcaccacgttgttgtccctgtgaatcccaaaaatgacaggctctgggaaaggctgggg
aaaaaccacattcgaactgatgatgtacatgcgaaggacaacacaagacctggtgctaat
agtccagagatgtggtctgaagctattaaaatcctgaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgcagaaccaaaatagactgtgat
aacttggagcagtactttatgcaacaaggaggaggacctgataagaaaggacaccagttc
tcgtgtgtttgtcttcatggtgacagaaagcctcatgagagaaagcaaaacttggagaga
tttaagaagggagatgtgagattcttgatttgcacggatgtagctgccagaggaattgat
atccatggtgttccttatgtcataaatgtcaccctgcctgatgaaaagcaaaactatgta
caccgaatcggcagagtaggaagagctgaaaggatgggtctggctatttccctggtggca
acagaaaaggaaaaggtttggtatcatgtgtgtagcaatcgtggaaaaggatgttataac
acaagactcaaagaagatgggggctgtaccatatggtacaatgagatgcagctgctgtcc
gaaatagaagaacacctgaactgtaccatttctcaggttgagcctgatataaaggttcct
gtggatgagtttgatgggaaagttacctatggtcaaaaaagggctgctggtggtggaaac
tataaaggccatgtggatatcttggcacctactgttcaagagttggccgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcccaaccagctgttcagaaccttc
tga
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