Perognathus longimembris pacificus (Pacific pocket mouse): 125357033
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Entry
125357033 CDS
T08928
Name
(RefSeq) PH-interacting protein
KO
K11797
PH-interacting protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125357033
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125357033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Bromodomain
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_SCAP
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF12
McrBC
WbmS-like
Motif
Other DBs
NCBI-GeneID:
125357033
NCBI-ProteinID:
XP_048209610
LinkDB
All DBs
Position
9:5638865..5731046
Genome browser
AA seq
1823 aa
AA seq
DB search
MSRERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTY
QNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVW
KGSALAALHCGRPPESPINYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRIL
GHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI
AAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLW
DAGTLKINPRPTKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISE
LEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMTTRPAGQNLQGIED
KITKMKVTMVAWDRHDSTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPR
VLFSAGHDGNVIVWDLARGVKVRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLI
FGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPS
RYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDSMIQRLQQEQDLRRSG
EAGVSNTSRLSRGSVSSTPEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWS
RRVVVPELSAGVASRQEEWRTAKGEEEIRTYRSEEKRKHLTVAKENKIITVSKNHTHEHF
LDLAESRKQQANPHNYRTRSALEETPRPLEDIENGTSSSDEGEVVAVSGGTSEEEERAWH
SDGSSSDYSSDYSDWTADAGINLQPPKKVPKHKTKKAESSSDEEESEKQKQKHIKKERKK
VNEEKDGPTSPKKKKPKERKQKRLAVGELTENGLTLEEWLPSTWITDTLPRRCPFVPQMG
DEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCL
KLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWW
FGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDMELIPHNAVFPEELGTSVPLTD
IECRSLIYKPLDGEWGSNPRDEECERIVTGINQLMTLDIASAFVAPVDLQAYPMYCTVVA
YPTDLSTIKQRLENRFYRRFSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIK
DQTCYNLIPLYNSMKKKVLSDSEEEEKDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAW
KKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMEL
CKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKRR
KKRNRSSSLSSSAASSPERKKRTLKPQLKSEMSTSPFSAPARSAPPRHNAAQINGKAEPS
SAVRTRSNRVVVAPAIPEQPSTSSAAKTLLSRPNTSAMPAKALLENSVKHSKAMNTFVSP
DQSTLSHGTRNNSTKENMEKEKPVKRKMKSSVLSKAPSTLSKSPAGIDPGDCKNSAVVPG
AIQVNGHGGQPSKLVKRGPGRKPKAEVNANSGEIIHKKRGRKPKKLQYARPDNSEQNNMY
PIGDEVVPSSACNFLSESNIGKEDLLQKKSRGGRKPKRKMKTQKIDSDLPVPTNVKVLRR
SNRKKTDDTIEEEEEEEFEELKGSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLT
FGTSSRGRVRKLTEKAKANLIGW
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcgagcggaaaggcctctcggagctgcgatccgagctctacttcctcatcgcc
cgcttcctggaggacggaccgtgccagcaggcggcccaggtgctgatccgcgaggtggcc
gagaaggagctgctgccccgccgcaccgactggaccggcaaggagcaccccaggacctac
cagaacctggtgaagtattaccgacatctggcacctgatcacttgctacagatatgtcat
cgactaggacctcttcttgagcaagaaattcctcagagtgttcctggagtacaaacctta
ttaggagctggaagacagtccttgctacgcacaaataaaagctgtaagcatgttgtgtgg
aaaggatctgctctggctgcactgcattgtggaagaccaccagagtcaccaattaactat
ggtagcccacccagcattgctgatactctgttttcaaggaaattgaatgggaaatacaga
cttgagcgtcttgttccaactgcagtatatcagcacatgaagatgcataagagaattctt
ggacacttgtcatctgtgtactgtgtaacttttgatagaactggcagacggatctttact
ggttctgatgactgtcttgtgaaaatctgggcaacagatgatgggaggttattagctact
ttaagaggacatgctgcggaaatatcggacatggcggtgaactatgagaatactatgata
gcagctgggagttgtgacaaaatgattcgtgtctggtgtcttcgaacctgtgcaccttta
gctgttcttcaggggcatagtgcatcaattacatcactacagttttcgccattgtgcagt
ggttcaaagagatatctatcttctactggagcagatggcactatttgtttttggctgtgg
gatgctggaacacttaaaataaatccacgacctacaaaattcacagaacgccctcggcct
ggagttcagatgatctgttcttcttttagtgctggtggaatgtttcttgccacaggaagc
acagaccatattattagagtttatttctttggatcaggtcagccagagaaaatatcagag
ttggagtttcatactgataaagttgacagtatccagttttccaacactagtaacaggttt
gtaagtggtagccgtgacggcacagcacgtatttggcagtttaaacgaagagaatggaag
agtattttgttggatatgactactcgtccagcaggccaaaatctccaaggaatagaagat
aaaatcacaaaaatgaaagttactatggtagcttgggatcgacatgacagcacagttata
actgcggtcaataatatgactctgaaagtttggaattcttacaccggccaacttattcat
gttctcatgggtcatgaagatgaagtctttgttcttgagccacatccattcgatcctaga
gttctgttttctgctggtcatgatggaaacgtgatagtttgggatctagcaagaggagtt
aaagttcggtcttactttaacatgattgaaggccaaggacatggtgcagtatttgactgc
aaatgctctcctgatggtcagcattttgcatgtacagactctcatggacatcttttaatt
tttggctttgggtccagtagcaaatatgataagatagctgatcaaatgttctttcatagt
gattatcggcctcttatccgtgatgccaacaattttgtattagatgagcagactcagcag
gcacctcatctcatgccccctcctttcttggttgatgtggacggtaatcctcatccatca
agatatcagagattagttccaggtcgagaaaactgcagggaagagcagctcatccctcaa
atgggagtaacctcctcagggttgaaccaggttttaagtcagcaagcaaaccaggagatc
agtccactggacagcatgattcaaagactacagcaagagcaagacctcaggcgttctggt
gaagcaggtgtcagtaatactagccgtttgagtagaggctctgtaagttctaccccagaa
gttcattcaccacctaatgttggactaaggcgtagtggacaaattgagggtgtgcggcag
atgcacagcaatgctccaagaagtgaaatagccacagagcgagaccttgttgcttggagt
cgaagagttgtagtgcctgagttgtctgctggtgtggccagtaggcaagaagaatggaga
actgcaaagggagaagaagaaataaggacttacaggtctgaagaaaaaaggaaacattta
actgttgcaaaagagaataaaataattactgtttcaaagaatcatactcatgagcatttc
ctggaccttgcagaatccagaaagcaacaggcaaacccacacaattatcgtacaagatct
gcactggaagaaactcctaggcccttggaggatatagaaaatggcacaagttcatcagat
gaaggggaggtagttgctgtcagcgggggaacctctgaagaggaagagagagcatggcac
agtgatggcagttctagtgattattccagtgattactcagactggactgcagatgcagga
attaatttgcagccaccaaagaaagttcctaagcataaaaccaagaaagcagaaagcagt
tcagatgaagaagaatctgaaaagcagaaacaaaagcatattaaaaaggaaaggaaaaaa
gtaaatgaagaaaaagatggaccaacatcaccaaagaaaaagaagcccaaagaaagaaaa
caaaagagattggctgtaggagagctaactgaaaatggtttgacgttagaagaatggctg
ccttcaacgtggattaccgatacccttcctcgaagatgtccattcgtgccacagatgggt
gatgaggtttattattttcgacaaggacatgaagcatatgttgaaatggctcggaaaaat
aaaatttatagtattaatcccaaaaaacaaccatggcataaaatggaattaagggaacaa
gaattgatgaaaatagttggcataaagtatgaagtgggattacctaccctttgctgcctt
aagcttgcttttttggatcctgatactggtaaactgactggtggatcatttaccatgaaa
taccacgacatgcctgatgttatagatttcctagtcttgagacaacagtttgatgacgca
aaatatagacggtggaatataggtgaccgtttcagatcagtcatagatgatgcctggtgg
tttggaacaattgaaagccaggaacctcttcaaccagaataccctgatagtttgtttcag
tgttacaacgtttgctgggacaatggagatacagaaaaaatgagtccgtgggatatggaa
cttatacctcataatgctgtatttcctgaagaactaggtaccagtgttcctttaactgac
atcgaatgccgatcactaatctataaacctcttgatggagaatggggtagcaatcctaga
gatgaggaatgtgaaagaattgttacagggataaaccaattgatgacactagatattgct
tcagcatttgtggcccctgtggatctacaagcttatcccatgtactgcactgtagtggca
tacccaacagatctaagtacaattaaacaaagattggaaaataggttttacaggcggttt
tcttccctaatgtgggaagttcgttacatagagcataatacgcgaacgtttaatgaacca
ggaagccccatcgtgaaatctgctaaatttgtgactgatcttcttctacatttcataaaa
gatcagacttgctataaccttattccattatataattcgatgaagaagaaagttttatct
gactctgaggaggaagagaaagatgcagatgtgccaggaacttccacccggaagaggaag
gaccatcagcctagaagaagattacggaacagagcccagtcctatgatattcaagcatgg
aagaaacaatgtcaggaattgttaaatctcatatttcagtgtgaagattcggagcctttt
cgccagccagtggatctccttgaatatccagactacagagacatcatcgatactccaatg
gattttgccactgttagagaaactttagaggctgggaattatgagtcaccaatggagtta
tgtaaagatgtcagacttatttttagtaattccaaagcatatacaccaagcaaaagatca
aggatttacagcatgagcttgcgtctgtcggctttctttgaagagcacattagttcagtt
ttatcagattataaatctgcccttcgatttcataaaagaaataccataacgaaaaggagg
aagaaaagaaacagaagcagctctctttccagcagtgctgcatcaagccctgagaggaaa
aaaaggaccttaaaaccccagctcaagtcagaaatgtctacctctccattctctgcacct
gcacgatcagcacccccaaggcacaatgctgctcagataaacgggaaagcagaacctagt
tctgctgttcggactcgaagcaaccgagtggttgtagccccggctatccccgagcagccg
tctacttcatcagccgcaaagactttgctttccagacctaatacatctgcgatgccagca
aaagcattactagagaattccgtgaaacattccaaagctatgaatactttcgtaagtcct
gatcaatccactttaagtcatggcactagaaataattccacgaaagaaaatatggaaaag
gaaaagccagtcaaacgtaaaatgaagtcatccgtactttcaaaggccccctccactctt
tcaaagtcaccagctggcattgatccaggagactgcaagaacagtgctgtggtaccagga
gccattcaagtaaatggccacgggggacagccgtcaaagcttgtgaagagggggcctgga
cggaaacccaaggcagaggttaatgccaacagtggtgaaattatacacaagaaaaggggg
agaaagcccaaaaagctacagtatgcaaggccagacaattccgagcaaaataatatgtat
cccatcggagatgaagtggttccttcttcggcatgcaattttctttctgaaagtaacatt
ggtaaggaggatttgttacagaaaaagagtcgtggaggcagaaaacccaaaaggaagatg
aaaacacaaaaaatagattccgatctcccagttcccacgaatgttaaagtgctaaggaga
agtaacaggaaaaagacagatgacactatagaggaggaggaagaagaggagtttgaagaa
ctcaaaggctctgaaccccacatgagaactagaaaccaaggtcgaaggacagctttttac
aacgaggatgactctgaagaagagcagaggcagctgttgttcgaggacacctctttaact
tttggaacttctagtagaggacgagtccgaaagttgactgaaaaagcaaaagctaattta
attggttggtaa
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integrated database retrieval system
