Perognathus longimembris pacificus (Pacific pocket mouse): 125357094
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Entry
125357094 CDS
T08928
Symbol
Prdm1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125357094 (Prdm1)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
125357094 (Prdm1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
zf-C2HE
STL11_N
Motif
Other DBs
NCBI-GeneID:
125357094
NCBI-ProteinID:
XP_048209711
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All DBs
Position
9:complement(13442586..13541854)
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AA seq
819 aa
AA seq
DB search
MLDLCLEKRVGTTLAAPKCSSAAVTFPGSAGGTEKTMKMDVKDADMTRWTEAEFELNCTY
IVNDHPWDSGSDGGTSVQAEASLPRNLLFKYAPDSKEIIGVLSKEYIPQGTRFGPLVGEV
YTSETVPKNANRKYFWRIYSGGELHHFIDGFNEEKSNWMRYVNPAHYAQEQSLAACQNGM
NIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTGMNLTPAHSNPKQSGADTHELCP
KNVPKREYSVKEILKMDSNPSKGKDLCRSNISPYTPEKDLDDFRKIRSPDKPVYPRVVYP
IRAPLPEDFLKASLAYGMERPTYITHSPLPSSTTPSPSARSSPEHSLKSSSPHSSPGTTV
SPLAPGSQEPRDSYTYWNTPYGAAEGLGSYPGYTPAPHLPPTFLPSYNAHYPKLLLPPYG
MNCNINGINNFSLFPRLYPVYGNLLGGGSLPHPMLAPASLPSSLPSEGARRLLPPEHPRE
VLLPAPHSAFSLTGAAASMKDKTCSPTSGSPTAGTAATSEHVVQPKATSAVMAAPSSEEA
MNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQ
TCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPA
KFTQFVHLKLHKRLHTRERPHKCAQCHKSYIHLCSLQVHLKGNCPVAPAGGLTAEDLTRI
NEEIEKFDISDNADRLEDMEDNIDLTSVVEKEILAVVRKEKEDTGLKVALQRNLGSGLLS
SGCGLYESPDLSLMKLPRSKPLPLGPVKVKQETVEPMDP
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgttggatctttgcttggaaaaacgtgtgggtacgaccttggctgcccccaagtgtagc
tccgctgctgtgacgttcccggggtcggcaggagggaccgagaagaccatgaaaatggac
gtgaaggacgcggacatgactcgctggacagaggctgagttcgaactgaactgtacctac
attgtcaacgaccatccctgggattcggggtcggatggggggacctcggtgcaggcagag
gcctccttacccaggaatctgcttttcaagtatgccccggacagcaaagagattatcgga
gtgctgagtaaagaatatataccacagggaactcgatttgggccccttgtaggtgaagtc
tacaccagtgagacagttcccaaaaatgccaacaggaaatatttttggcggatttactcc
ggaggggaacttcaccacttcattgatggctttaacgaggagaaaagcaactggatgcgt
tatgtgaatccggcgcactatgcccaggagcaaagcctggctgcgtgtcagaacgggatg
aacatctatttctacaccattaaacccatccctgccaaccaggaacttcttgtgtggtat
tgtcgggactttgcagaaagactccactacccttatcctggagagctcacggggatgaat
ctcacaccagcacacagcaacccaaagcaaagcggtgctgatacacatgaactttgccca
aagaacgttccaaagagagaatacagtgtgaaagaaatcctaaagatggactccaacccc
tccaaagggaaggacttgtgccgttctaacatttcaccctacactccagaaaaggacctg
gatgacttcaggaaaatcaggagccccgataagcccgtgtaccctcgggtagtctaccct
atccgagcccctctgccagaagactttttgaaagcttccttggcctatgggatggagaga
ccaacttacatcacccattccccactcccatcgtccaccaccccaagtccttccgccaga
agcagccctgagcacagcctcaaaagttccagccctcacagcagccctgggaccaccgtg
tcccccctggcccccggctcgcaagaaccccgggactcctacacctactggaatacaccc
tatggcgccgccgaaggcctgggctcttaccctggatacacccctgccccccacctccca
cccactttcctcccctcttacaatgctcactaccccaagctcctgttgcccccctatggc
atgaattgcaacatcaatggcatcaacaacttcagcctgttccccaggctgtaccctgtc
tacgggaacctcctgggagggggcagcctgccgcaccccatgctcgccccggcctccctg
cccagctccctgccctctgaaggagcccggcggctgcttcctcctgagcacccccgggaa
gtgctgctcccagcaccccacagtgccttttccctcaccggggctgcagccagcatgaag
gacaagacctgcagccccacgagtggctctccaacggcggggacagccgccacgtcggaa
cacgtggtccaacccaaagctacctcagcagtgatggccgcccccagcagtgaggaagcc
atgaatctcattaagaacaaaagaaacatgacgggctacaaaacgctcccctacccactc
aagaagcagaacggcaagatcaagtatgagtgtaacgtctgtgccaagacgtttggccag
ctctccaatctcaaggtccacctgagagtacacagtggagagcggcctttcaaatgccag
acttgcaacaagggcttcactcagctcgcccacctgcagaaacactacctggtgcacaca
ggagaaaagccacacgagtgccaggtctgccacaagcgatttagcagcaccagcaatctc
aaaacccacctgcgactccactcgggagagaagccttaccaatgcaaggtgtgcccggcc
aagttcacccaattcgtgcacctgaagctccacaagcgactgcacacccgggagcggccc
cacaagtgtgcccagtgccataagagttacatccacctgtgcagcctgcaggtccacctg
aaggggaactgccccgtggcccccgcgggcgggctgaccgccgaggacctgacccgcatc
aacgaggaaatcgagaagtttgacattagcgacaatgccgaccggctagaagacatggag
gacaacatcgacttgacttctgtggtggagaaggaaatcctagctgtggtcagaaaagag
aaagaagacactggcctgaaagtggctttgcaaagaaacctggggagcggactcctctcc
tcaggatgcggcctctatgagtcaccagacctttccctcatgaagttgcctcgcagcaaa
ccactacctctgggacctgtaaaggtcaaacaagaaacagtcgaaccgatggatccttaa
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