Perognathus longimembris pacificus (Pacific pocket mouse): 125357169
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Entry
125357169 CDS
T08928
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
plop05202
Transcriptional misregulation in cancer
plop05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125357169
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
125357169
05205 Proteoglycans in cancer
125357169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125357169
03009 Ribosome biogenesis [BR:
plop03009
]
125357169
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125357169
Spliceosome [BR:
plop03041
]
Complex A
U1 snRNP components
U1 related factors
125357169
Complex B
125357169
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Helicases
125357169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
BNIP2
Motif
Other DBs
NCBI-GeneID:
125357169
NCBI-ProteinID:
XP_048209856
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Position
9:complement(31537116..31539307)
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AA seq
614 aa
AA seq
DB search
MSSYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEITGKGHNCPKPVLNFFEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCKACRLKSTCIYGSAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNMR
RRTYLVLDEADRMLDMGFEHQIRKIVDQIRPDRQTLMWSATXPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEETMSEKENKTIVFVETERRCDELTRK
MRRDGWPAMGIRGDKSQQECDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIQRIGRTAHSTKTGTAYTFFTPNNIKQVSNLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKYDRHDRYSVGKRGGFNTFRDRENYDRGYSSLLKREFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
APMIGYPMPTGYFQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttattcgagtgaccgggaccgcggccgggatcgagggtttggtgcgcctcga
tttggagggagtagggcaggacccctatctggaaagaagtttggaaatcctggggagaaa
ctagttaaaaagaagtggaaccttgatgagctccccaaatttgaaaagaatttttatcaa
gaacatcctgatttggctaggcgcacagcacaagaggtagagacatatagaagaagcaag
gaaattacagggaaaggtcacaactgtccaaagccagttttgaatttctttgaagcaaat
ttccctgcaaatgtcatggatgtgattgcaaggcagaactttactgaacccacggctatt
caagctcagggatggccagttgctcttagtggattggacatggttggagtagcacagact
ggatctgggaaaacgttgtcttatttgctgcctgccatcgttcacatcaatcatcagcca
ttcctagaaagaggtgatgggcctatttgtttggtgctggcaccaactcgagaactggcc
cagcaggtgcagcaagtagctgctgaatactgtaaagcttgtcgtttaaagtctacttgc
atctatggtagtgctcccaagggaccacaaatacgtgatttggagagaggtgtggagatc
tgtattgcaacgcctggaagactgattgactttctagagtgtgggaaaaccaatatgaga
agaagaacctaccttgtccttgatgaagcagatagaatgcttgatatgggttttgaacac
caaataaggaagattgtggatcagataagacctgatagacaaaccctaatgtggagtgcg
acttagccaaaagaagtaagacagcttgctgaagatttcctgaaagattacattcatata
aacattggtgcactagaactgagtgcaaaccacaacattcttcagattgtggatgtatgt
catgatgtagagaaggatgaaaaacttattcgtctaatggaagagaccatgagcgagaag
gagaataaaaccattgtttttgttgaaaccgaaagaagatgtgatgaacttaccagaaag
atgaggagagatgggtggcctgctatgggtatccgtggtgacaaaagtcaacaggaatgt
gactgggttctaaatgaattcaaacatggaaaagctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcaacgaattggaagaactgctcacagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcaaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaagtatgaccgccacgacagatactctgtgggc
aaaaggggtggatttaatacctttagagacagggaaaattatgacagaggttactctagt
ctgcttaagagagaatttggggcaaaaactcagaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttatgatagcactcagcaatacggaagtaat
gttccaaatatgcacaatggtatgaaccaacaggcatatgcgtatcctgctactgcggct
gcgcctatgattggctatccaatgccaacaggatattttcaataa
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