Perognathus longimembris pacificus (Pacific pocket mouse): 125357176
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Entry
125357176 CDS
T08928
Symbol
Rims1
Name
(RefSeq) LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04721
Synaptic vesicle cycle
plop04723
Retrograde endocannabinoid signaling
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09156 Nervous system
04723 Retrograde endocannabinoid signaling
125357176 (Rims1)
04721 Synaptic vesicle cycle
125357176 (Rims1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125357176 (Rims1)
Membrane trafficking [BR:
plop04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
125357176 (Rims1)
Small GTPases and associated proteins
Rab associated proteins
125357176 (Rims1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
PDZ
FYVE_2
PDZ_6
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-GeneID:
125357176
NCBI-ProteinID:
XP_048209861
LinkDB
All DBs
Position
9:32310687..32858073
Genome browser
AA seq
1669 aa
AA seq
DB search
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPPRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICH
KTKFADGCGHLCSYCRTKFCARCGGRVSLRSNSEDKVVMWVCNLCRKQQEILTKSGAWFF
GSGPQHPSQDGTLSDTATGAGSEVPREKKPRLQERSRSQTPLSTVAISSQDTAPPSAPRD
RSKGADSAQQALGPEQKQASSRSRSEPPRERKKAAGVSEQNGKAAPKADRKRGPKTAAQS
GEGFTEDRERKERQEGRRLEKGRSQEYPDVRDKREAGQAAAAEKQRKEEEFQTRYRSDPN
LARYPVKPLPEEQQMRMHARVSRARHERRHSDVALPHTEAGPAAPESQAGPRAPGPDSPC
AYAPERTAAPRHGPGPAEAPEAPAPEHLRKQNRLDPGSAVLIRKAKREKVESMLRNDSLS
SDQSESVRPSPPKPHRSRRGGKKRQMSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDL
DYYWLDPATWHSREASPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVG
GKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSE
PQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVL
PGQLSVRLWYDRVGHQLIVNVLQATDLPPRADGRPRNPYVKMYFLPDRSDKSKRRTKTVK
KVLEPKWNQTFVYSHVHRRDFRERMLEITLWDQPRAQEEESQFLGEILIELETALLDDEP
HWYKLQTHDESSLPLPQPSPFLPRRHLHGENSSKKLQRSQRISDSDISDYEVDDGIGVVP
PVGYRSSAREIKATTLTVPEQQRTTHHRSRSVSPHRGEDQGRPRSRLPNVPLQRSLDEIH
PTRRSRSPTRHHDASRSTTDHRARDVDSQYLSEQDSELLMLPRAKRGRSAECLHTTRHLV
KHYKSLPPKMPLLQNGSHWDVYSSILPAHAKTKSVTRQDLSFHHEYFNSRILRLIDEILL
SELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLDRRRPPSPRIQIQHASPENDRH
SRKSERSSIPKQTRKSTGSDAERVLPPCLSRRRYAAPRTAGQTDIXGKHPTRSRRSEHSS
VRTMCSIYHLLPGGSAPPSPLLTRMQRQGGSSQSPVAESSLGSRRGRQLPQVPVRSSSIE
QASLVVEERTRQMKMKVHRFKQTTGSGSSQELDREQYSKYNIHTDQYRSCDNVSAKSSDS
DVSDVSAISRASSASRLSSTSFMSEQSERPRGRVSSFTPKIQGRRMGTGRAITKSTSMSG
EIYTLEHNDGSQSDTAVGTVGTHGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLK
STIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQFSDFLDGL
GPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLE
NGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILL
EELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSTGPPCIRS
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggccgtggggccccgaggtcctcgcccacccacggtgcctccccccatgcaa
gagctgccggacctgagccacctgaccgaggaggagagaaacatcatcatggcagtgatg
gaccggcagaaggaagaggaggaaaaagaagaagccatgcttaagtgtgttgtcagggac
atggcgaagcctgctgcctgcaaaacaccaagaaatgctgaaagccagcctcaccaacct
ccaccgagattgcatcaacagtttgaaagctataaagaacaagtgagaaaaataggcgaa
gaagccaggcgctaccaaggggaacacaaggacgatgcacccacgtgcggcatctgccac
aaaactaagttcgcggatggctgtggacacctgtgctcttactgccggaccaagttctgc
gcgcgctgtggaggccgcgtttctctgcggtccaacagcgaggacaaagtggttatgtgg
gtatgcaacttatgtcgaaagcaacaagaaatcttaaccaaatctggggcgtggttcttt
ggaagcggtcctcagcacccaagtcaggacggaaccctgagtgacacagccacgggtgct
ggatcagaggtacccagagaaaagaaaccacgactgcaagagcggtccaggtcgcagaca
cccctgagtacggtggccatctcctcacaagacactgcgccccccagcgcaccacgagac
agaagcaaaggggcagattctgcacagcaagcactggggcccgaacagaagcaggcttca
tctaggtctagaagtgaacctcccagagagaggaagaaggccgcgggggtctcggagcag
aatggcaaagctgccccgaaagccgatcgcaaacgcgggccaaagaccgccgcgcagtcc
ggtgaaggcttcacggaagatcgggagcggaaggaaaggcaagaaggccgccggctggag
aaggggagatcccaggaataccccgacgtgagggacaagcgcgaggcgggccaggcggcg
gcggcggagaagcagaggaaggaggaggagttccagacccggtaccgcagcgacccaaac
ctggcgcggtacccggtgaagcccctgcccgaggagcagcagatgcgcatgcacgcccgg
gtgtcccgtgcccggcacgagcggcgccacagcgacgtggcgctcccgcacacagaagcc
gggcccgcggcgcccgagagccaggccggcccgcgagcgccgggcccggactcgccgtgt
gcctatgcacctgagaggacggcggcgcccaggcacgggccaggccccgcagaagccccg
gaggcccccgccccggagcacctcaggaagcagaaccgcctggaccccggctctgccgtc
ctcatccgcaaagccaagcgggagaaggtggagagcatgctgcggaacgactcgctgagc
tccgaccagtccgagtcagtgcgcccctcgccgcccaagccgcacaggtcccggaggggc
ggcaagaagcggcagatgtcggtgagcagctcggaggaggagggcgtgtccacccctgag
tacacgagctgcgaggacgtggagctggagagtgagagcgtgagcgagaaaggtgacttg
gattattactggttggatcctgccacgtggcacagtcgggaggcctcacctatcagttcg
catcctgtaacgtggcaaccatctaaagagggtgatcggctaattggacgtgttattctt
aacaaaagaacaaccatgcccaaagaatcaggtgcattattgggacttaaagttgttgga
ggaaaaatgactgacttaggacgcctgggtgctttcatcaccaaagtgaagaaaggtagc
cttgcagatgtagttggccatctacgagcaggggatgaagttctagaatggaatggtaaa
cccctgcctggagctacaaatgaagaagtttacaacattattttagaatcaaaatcagaa
cctcaagttgaaattattgtttcaaggcctattggtgacattccccggattcctgagagc
tctcatcctccactggaatccagttccagttcctttgaatctcagaagatggaaaggcct
tctatttctgtgatttctccaacaagtcctggagctctaaaagatgccccacaagtctta
ccagggcagctctctgtgaggctgtggtatgacagagtggggcaccagctgatcgtgaat
gttctacaagcaacagatctaccccctagagcagatggccggcctagaaatccctatgta
aaaatgtattttcttccagatagaagtgacaaaagtaaaaggaggaccaaaacagtaaag
aaagttctagaacccaaatggaaccaaactttcgtctattcgcatgtccatcgtcgtgat
tttcgagaacggatgttagaaataactttgtgggatcagcctagggcacaagaagaagaa
agccaatttcttggagagatccttatagaattggagacagcacttttagatgatgaacct
cactggtacaaacttcagacccatgatgagtcttcactacctctgcctcagccatcaccc
ttcctgcccaggagacatcttcatggagaaaactctagcaaaaagctacaaagatctcag
cgaatcagtgatagtgatatctcagattatgaggttgatgatggtattggagtagttcct
ccagtgggctataggtctagtgctagagaaattaaagcaaccaccttaacagtgccggaa
cagcaaagaaccacccatcaccgctcacgctcagtatctcctcatcgcggtgaagatcag
ggaagaccgcgttcacgtttaccaaatgtgccattacagaggagcttagatgaaattcat
ccaaccagaaggtcacgctctccaaccagacaccatgatgcctcccgaagtaccactgac
cacagagccagagacgtggacagtcaatatttatctgaacaagacagtgagcttcttatg
ctgcccagagcaaaacgaggacgaagtgcagaatgcctacatactacaagacatcttgtt
aaacactataaatcattaccacccaagatgcctttattacagaacggctctcattgggat
gtctacagctccattctgcctgcacatgctaagaccaaatcagtgactagacaggacctt
tcctttcatcatgagtactttaactcaagaatattgagattaattgacgaaatactgctt
agtgaactacagccctcacttgacagggctaggagtgctagtactaactgcttgagacca
gatactagtttgcattcaccagaacgagaaaggggtagatggtctccctccctagatagg
agacgacctcctagccccaggattcaaatccaacatgcatctccggagaatgacaggcat
tccagaaagtctgaaagatctagcatccctaaacagactaggaaaagcactggctctgat
gcagaaagggttctcccaccatgtctttctagaaggagatatgcagccccacgaacagct
ggtcaaacagacattnagggaaaacatcccactcgctccagaaggagtgagcactctagt
gtcagaactatgtgttctatataccaccttctgcccggaggctcagctccaccttctcca
cttctgacaagaatgcaaagacaagggggttccagccagtctcctgtggcagagagcagc
ctgggcagccggcgaggaagacagctcccacaggtgccagtgaggagcagcagtatagaa
caagcaagcttagtagtggaggagcgaacaagacagatgaaaatgaaagtgcatcgattt
aagcagacaacagggtctggttctagtcaagaacttgatcgcgagcaatattccaagtat
aatatacatacagatcagtacagaagctgtgataacgtctctgccaagtcttcagatagc
gatgtcagtgatgtgtctgccatttctcgagccagcagtgcctcccgcctcagcagcaca
agcttcatgtcagagcaatctgagcgccccaggggaagggtcagttcatttacccccaaa
atacaaggcagacggatggggacgggaagagccatcacaaagagcaccagtatgagtgga
gaaatatacacactggagcataatgatggcagccagtcagacacagccgtgggtaccgtt
ggaacacatgggaagaaacggagatccagcctgagtgccaaagtggtagccatcgtttct
cgaagaagtcgaagcacatctcagcttagccaaacagagtcaggtcacaagaagttaaaa
agcaccattcagagaagcacagaaacaggcatggcagcggaaatgaggaagatggtaaga
cagccaagccgggagtctactgatggcagtatcaacagctacagctcagagggcaactta
atctttcctggagtgcgactgggtgctgacagtcagttcagtgattttcttgatggactg
ggacctgcccagctggttggccgccaaaccctcgccacgcctgcaatgggtgatatacaa
attggaatggaagataaaaagggccagttagaagtagaagttattagagcacgaagtctc
acacaaaaacctggttctaagtctacaccagctccttatgtcaaagtatatcttttggaa
aatggagcctgtatagccaaaaagaagacaagaattgcacggaaaactcttgatcctttg
tatcaacagtccttggtttttgatgaaagtccacagggaaaagttcttcaggtgatcgtg
tggggagactatggcagaatggaccataaatgctttatgggtgtggctcaaatcttattg
gaagaactcgatctgtccagcatggtgattggatggtacaaattgttcccaccctcatca
ctggtggatcctacactcactcccctgacccgcagggcttcccagtcttctctggagagt
tcaactgggcctccctgcatccgatcatag
DBGET
integrated database retrieval system
