KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125357302
Entry
125357302         CDS       T08928                                 
Symbol
Tbpl1
Name
(RefSeq) TATA box-binding protein-like 1 isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022  Basal transcription factors
plop05016  Huntington disease
plop05017  Spinocerebellar ataxia
plop05165  Human papillomavirus infection
plop05166  Human T-cell leukemia virus 1 infection
plop05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125357302 (Tbpl1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    125357302 (Tbpl1)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    125357302 (Tbpl1)
   05165 Human papillomavirus infection
    125357302 (Tbpl1)
  09164 Neurodegenerative disease
   05016 Huntington disease
    125357302 (Tbpl1)
   05017 Spinocerebellar ataxia
    125357302 (Tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:plop03000]
    125357302 (Tbpl1)
   03021 Transcription machinery [BR:plop03021]
    125357302 (Tbpl1)
Transcription factors [BR:plop03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    125357302 (Tbpl1)
Transcription machinery [BR:plop03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125357302 (Tbpl1)
  RNA polymerase III system
    TFIIIB
     125357302 (Tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     125357302 (Tbpl1)
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 125357302
NCBI-ProteinID: XP_048210072
LinkDB
Position
9:51907561..51938202
AA seq 206 aa
METGERARLIFILVLQLLLRIRRHRQQRCRRVLCDRPIFPRTRCHLNLRKIALEGANVIY
KRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDF
KVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVT
GPNVKAVATAVEQIYPFVFESRKEIL
NT seq 621 nt   +upstreamnt  +downstreamnt
atggagactggggagcgcgcccgcctcatcttcatcctcgtcctccagcttctgcttcgc
atccgacgccaccggcagcagcgctgccgccgcgtcctctgcgaccgccccatcttccca
cgaacaagatgccatttgaacttaaggaagattgctttggagggagcaaatgtaatttat
aagcgtgatgttggaaaagtattaatgaagcttagaaaacctagaattacagctacaatt
tggtcctcaggaaaaattatttgcactggagcaacaagtgaagaagaagctaagtttggt
gccagacgtttagctcgcagtctgcagaagctaggttttcaggtaatttttacagatttt
aaggttgtaaatgtcttggcagtttgtaacatgccctttgaaattcgtttgccagaattc
acaaagaacaatagacctcatgccagttacgaacccgaacttcatcctgctgtgtgctac
aggataaagtctctaagagctacattacagattttttcaacaggaagtatcacagtaaca
gggcccaacgtgaaggctgtggctactgccgtggaacagatttacccatttgtgtttgaa
agcaggaaagaaattttataa

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