Perognathus longimembris pacificus (Pacific pocket mouse): 125357305
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Entry
125357305 CDS
T08928
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
plop05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125357305 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
125357305 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125357305 (Hbs1l)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125357305 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
NMT1_2
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
125357305
NCBI-ProteinID:
XP_048210078
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All DBs
Position
9:complement(52615248..52677943)
Genome browser
AA seq
677 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDKPVEYDYEELKDSP
NSHLNHQLSEIDQARLYSCLDHMREVLGGAVSDEILIEAILKNKFDVQKALSMVLEQDNV
QKLKDRSESAVATGKIAKGKSVGSQSSRSESEIVPKVAKMTVSGKKQTMGFEVPGENGHG
FHTPPKGPPGEDNSAVSNNVLDTTASKSALPPLSIQVSEEQSATPMAVKKSGKLKQQIDV
KVELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASF
AYAWVLDETGEERERGVTMDVGMTKFETATKVITLMDAPGHKDFIPNMITGAAQADVAVL
VVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITGKLGQ
FLKQAGFKESDVAFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKP
FRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAG
DHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEVPITKGFPVLLHYQTV
SEPAVIKRLISVLSKNTGEVVKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFML
RYSGSTIAAGVVTEIKE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcgtaatgtccgaggctataactacgatgaagattttgaagatgatgat
ctctatggccagtctgtagaggatgattattgtatttctccatcaacagctgctcagttt
atttactcacgacgtgacaaacctgtagaatatgattatgaagaactgaaagactctccc
aattctcatttgaaccaccagctaagtgaaattgaccaagctcgtctttattcatgcctt
gatcacatgagagaggtactgggaggtgctgtgtcagatgaaatactgattgaagcaatt
ctgaagaacaagtttgatgtgcagaaggccttgtccatggtactggaacaagataatgta
cagaagttgaaggacaggagtgagagtgcagtagccacagggaagatagcaaaaggaaaa
tcggtaggatctcagtcatctcgaagtgaatctgaaattgtgccaaaagttgctaaaatg
actgtttctggaaagaagcaaactatgggatttgaagtgcctggagaaaatggtcatggt
ttccacacacctccaaaaggacctcctggtgaagataacagtgccgtttctaacaatgtt
cttgataccacagcatctaagtcagctcttccacccctctccattcaagtgtcagaagag
cagagcgcaactcccatggcggtgaaaaagtctggcaagctgaagcagcagattgatgtg
aaagtggagctagagaagcggcaaggcgggaagcagctcctgaacctagtggtcattggt
cacgttgatgctgggaaaagcactctgatgggccatttgctttatcttctgggtaatgtg
aacaaaagaactatgcataagtacgaacaagagtccaaaaaagctggcaaagcttcgttt
gcgtatgcatgggtcttggatgaaacgggtgaagaaagggaaaggggagtaacaatggat
gttggaatgacaaagtttgaaactgcaaccaaagttattacattaatggatgctccaggc
cataaagattttattccaaatatgattacaggagcagcccaggcagatgtagctgtctta
gttgttgatgccagcaggggagagtttgaagctgggtttgagactggaggacaaactcga
gaacatggcctcttagttcgatctcttggagtgacacaactggcagttgcagtcaataaa
atggatcaggttaattggcaacaagaaagatttcaagagattactggaaaacttgggcaa
tttcttaagcaagcaggttttaaggagagtgatgtggcttttattcctacaagtggtctc
agtggtgaaaatctaatcacaagatctcaatcaagtgagctcacgaaatggtataaagga
ctgtgtttgctagaacaaattgattccttcaagcctcctcaacggtctattgacaagcct
tttagattatgtgtgtctgatgtcttcaaagatcaaggatctggattttgtgtgactggt
aaaattgaagctggctatattcagactggtgaccgactgctggcaatgcctcctaatgaa
acttgtactgcaaaaggaatcactcttcatgatgaacccgtcgattgggcagcggcaggc
gatcatgttagtcttactttggttgggatggatatcatcaaaatcaatgttggctgcata
ttttgtggccccaaagaacccattaaagcttgcactcgttttagagcccgaatcctcatt
tttaatattgaagttcctatcactaaaggatttcctgtgctgttacactaccagactgtc
agtgaacctgctgttattaaacgacttattagcgtcttaagcaaaaacacaggtgaagtc
gtgaagaaaaagcctaagttgttgactaaaggccagaatgctttggtggagctacagaca
caaagaccagtagcccttgagctttacaaagacttcaaggagctggggagattcatgttg
cgttacagtggttctacaatagctgctggtgttgtcactgagataaaagaatga
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