Perognathus longimembris pacificus (Pacific pocket mouse): 125357434
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Entry
125357434 CDS
T08928
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082
ATP-dependent chromatin remodeling
plop04714
Thermogenesis
plop05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125357434 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125357434 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125357434 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125357434 (Arid1b)
03021 Transcription machinery [BR:
plop03021
]
125357434 (Arid1b)
03036 Chromosome and associated proteins [BR:
plop03036
]
125357434 (Arid1b)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Helix-turn-helix
ARID
125357434 (Arid1b)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125357434 (Arid1b)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125357434 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
125357434
NCBI-ProteinID:
XP_048210311
LinkDB
All DBs
Position
9:66507480..66816668
Genome browser
AA seq
2404 aa
AA seq
DB search
MAARAAAAAAVTMRARARAGSGERRAPGARDPEAAAAAAPGPMLGGGDGGLNNVHPHPLH
PRHDLSMAHSASAQSGGSEAALKEGGSAAAAAPSSASSSSSAAAAAASSSTAGPGSAMET
GLLPNHKLKAVGEAPAAPPHHHHHHSHHHSHHARHAHHHHAHHLHHHHHALQQQLNQFQQ
QQQQQQQQQQHLPISNNNSLGGAPPPGPDMEPPPPPPHGGGGGGGGGAAAKDSAAGGPAD
PPGQPPLSKPGDEDDDAPPKMGEPAGGRYGEHPGLGALGAQQPPPPPPVAAGPGGGGGGG
GGGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGLMHAAAAGTP
GSMDPLQNSHEGYPGSSQYNHYPGYGRPGAGGGGGGGGGGGGSGGGGGGGGGGGGSGGGG
GAGAGAVAAAAAAAAAAAAAAAAAAGGGGGGGGGYGAPSSGYGVLSSPRQQGGGGGMMMG
PGGGGAASLSKAAAGAAAAAAAAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYG
ASYPDYSSPSAPPPPPSQPQSQAAAAAAAAAAAAGAAAGGQQAAAGLGLGKDLGAQYAAA
SPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSSPHSQPQQSSPYP
GSSYGPPGGQRYPLGMQGRAPGTLGAMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQ
PPHLPPQAQYLPPQSQPRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLP
DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPRLSSIPGGPSPSP
VGSPVGSNQSRSGPISPASIPGTQMPPQPPGSQSDSSSHPALSQSPMPQERGFMAGTQRN
PQMSQYGPQQTGPSMSPHPSPGGQMHPAMSNFQQSNSGGTYGPQMSQYGPQGNYSRPPTY
SGVPSASYSGPGPGMGTSANNQMHGQGPNQPCGAVPLGRMPSAGMQSRPFPGNMSSVTPS
SPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLMASGSPY
SQSMNNSSGLMNTQAPPYSMAPTMVNSSTASMGLADMMSPSESKLPMTLKADGKDEGTPQ
PESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPK
SSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVC
VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEV
FSTGDSKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPM
SGGRSSTISVHDPFSDISDPSFPKRNSMTPNTPYQQGMGVPDMMGRMPYEPNKDPFGGMR
KVPGSSEPFMTQGQMPNSSMQDMYNQSPSGAMSSLGMGQRQQFPYGAGYDRRHEPYGQQY
PGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYSMQYGGQQQELYNQ
YGSSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIPPQMMGGPMQSSSGEGPQQNMWA
ARNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQWPSHVTQRQPYMSPS
ASVQPITRPPQSSYPTPPSLPNHISRAPSPASFQRSLESRMSPSKSPFLPTVKMQKVMPA
VPTPQVAGPPAQPPPSRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDP
SQKALDHSSGDRDDSSSADDSGKEEEDSECLEEEDDDDEEEDNEEEEEGEKTESEAKSSG
APAPLDAGADPRERPKQASKFDKLPIKIVRKNKLFVLDRSARLGRVQEFSSGLLHWQLGG
GDTTEHIQTHFESKLEIPPRRRPPPGPAGRKPEPEGGGAPEEQPEKSILATIDDVLSARP
GALPEDSNPGPQADSGKFPFGIQQARSHRNIKLLEDEPRSRDETPLCTTAHWQDSLARRC
ICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEEEDKGV
ACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQD
PFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNP
VCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPP
PLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQ
IGQL
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcggcggcggcggcggtgacgatgagggcccgggcgcgggcgggc
agcggcgagcggcgggcgcccggggcccgggaccctgaggcggcggcggccgcggctccg
ggacccatgctggggggcggcgacggcggcctgaataatgtgcacccccaccccctgcac
ccccgtcacgacctgagcatggcccacagcgcgagcgcccagagcggcggctccgaggcg
gctctcaaggagggcggcagcgccgccgcggccgcgccgtcctccgcctcctcctcctcc
tccgccgccgcggcggcggcctcttcctccacggcgggccccggctcggccatggagacg
gggctgctccccaaccacaagctgaaagccgttggcgaggcccccgccgcaccgccccat
caccaccaccaccacagccaccaccacagccaccatgcccgccatgcccaccaccaccat
gcccaccacctccaccaccaccaccacgcactacagcagcagctaaaccagttccagcag
cagcagcagcagcagcagcaacagcagcaacatctccccatctccaacaacaacagcctg
ggcggcgcgcctccgcccggcccggacatggagccgccgccgccgccgccacatggagga
ggtggaggaggaggaggaggcgccgccgccaaggacagtgccgcgggcggcccggccgac
cccccgggccaacctccgctgagcaagccgggcgacgaggacgacgacgcgccgcccaag
atgggggagccggcgggcggccgctacggcgagcacccgggcctgggtgccctgggcgcg
cagcagccgccgccgccgccgccggtcgcggcggggcccgggggcggcggtggcggcggc
ggcggtggcggtggtggcggcggcggcccggcggccgtctcggagtttaataattactat
ggcagcgctgcccctgctagcggcggccccggcggccgcgccgggccttgctttgatcaa
catggcggacaacaaagccccgggatggggctgatgcacgccgccgccgccgggaccccc
ggcagcatggaccccctgcagaactcccacgaagggtaccccggcagcagccagtacaac
cattatccgggttacggccggcccggcgcgggcggcggcggcggcggcggcggaggagga
ggaggcagcggaggaggaggaggaggaggaggaggaggaggaggcagcggaggaggagga
ggagcaggagcgggagctgtggcggcggcggcggcggccgcggcggcggcggcggcagca
gcagcggcagcagcgggaggcggcggcggcggcggcggcggctatggggccccgtcctcg
gggtacggggtgctgagctccccccggcagcagggcggcggcggcggcatgatgatgggc
cccgggggcggcggggccgcgagcctcagcaaggcggccgccggcgcggcggcggcggca
gcggcggcggcggcggggggcttccagcgcttcgccgggcagaaccagcacccgtcgggg
gccaccccgaccctcaaccagctgctcacctcgcccagccccatgatgcggagctacggc
gccagctacccggactacagcagccccagcgcgccgccgccgccgccgtcgcagccccag
tcccaggcggcggcggcggcggcggcggcagcggcggcggcgggggcggcggcgggcggc
cagcaggcggccgcgggcttgggcttgggcaaggacctgggcgcccagtacgccgccgcc
agcccggcctgggcggccgcgcaacaaaggagtcacccggcgatgagccccggcaccccc
ggaccgaccatgggccgatcccagggcagtcccatggacccaatggtgatgaagagacct
cagttgtatgggatgggcagtagcccccactcccagccgcagcagagcagtccgtacccc
ggcagttcctacggtccaccaggcgggcagcggtaccccctcggcatgcagggccgggct
ccgggcactctgggagccatgcagtacccgcagcagcagatgccacctcagtatggacaa
caaggtgtgagtggttactgccagcaaggccaacagccatattacagccagcagccgcag
cccccgcacctccctccgcaggcccagtacctgccgccccagtcccagcccaggtaccag
ccacagcaggatatgtctcaggaaggttatggaactagatctcaacctcctctggctcct
ggaaaacccaaccacgaagacttgaatctcatacaacaggaaaggccctcaagcttacca
gacctgtctggctctatcgatgacctccccacgggaacggaagcaaccttgagctcagct
gtcagtgcctctgggtctacgagtagccaaggggatcagagcaacccggctcagtcgccc
ttctctccacacgcatcgccccgtctctccagcatcccaggcggcccgtccccctctcct
gttggctctcccgtaggaagcaaccagtcacgatcgggcccaatttctcctgcaagtatt
ccaggcactcagatgccgcctcagccgcccgggagccagtccgactccagttcccaccct
gccttgagtcagtcaccaatgccacaggaaagaggttttatggcaggcacacaaagaaac
cctcagatgtcgcagtatggaccccaacagacaggaccctccatgtcccctcacccttct
cctggggggcagatgcatcctgcaatgagtaactttcagcagagtaactcaggtggcact
tacggtccacagatgagccagtatggaccccaaggtaactactccagacccccaacgtat
agtggggtgcccagtgcgagctacagcggcccagggcccggtatgggcaccagtgccaac
aaccagatgcatggacaagggccaaaccagccctgcggcgcggtgcccctgggccggatg
ccgtcggcggggatgcagagcagaccgtttcctgggaacatgagcagcgtgacccccagc
tctccgggcatgtctcagcagggggggcctggaatggggccccccatgcccacggtgaac
cggaaggcccaggaggcggctgcagccgtgatgcaggccgccgcgaactcggcgcaaagc
aggcaaggcagttttcctggcatgaaccagagtggactcatggcttccggctctccctac
agccagtctatgaacaacagctccggcctgatgaacacacaggcgccaccctatagcatg
gcccccaccatggtgaacagctccacagcatctatgggtcttgcagatatgatgtctccc
agtgagtccaagctgcccatgacgctcaaagccgacggcaaggacgaaggcactccgcag
cccgagagcaagtcgaaggatagctacagctctcagggtatttctcagcccccaacccca
ggcaacctgccagtcccttccccaatgtcccccagctctgctagcatctcctcctttcat
ggagatgagagcgatagcattagcagcccaggctggccaaagactccatcaagccctaag
tctagctcatccaccaccactggggagaagatcacaaaggtgtatgagctggggaatgag
ccagagaggaagctgtgggtcgaccgatacctgaccttcatggaagagaggggctcccct
gtctccagtctgcccgcagtgggcaagaagcccctggacctgttccgactctatgtctgc
gtcaaagagattggaggtttggcccaggttaataaaaacaagaagtggcgtgagctggca
accaacctaaacgttggcacctcgagcagcgcagccagctccctgaaaaagcagtatatt
cagtacctgtttgcctttgagtgtaagatcgagagaggggaggagcccccgccggaagtc
ttcagcacgggggactccaagaagcagcccaagctccagccgccatctcctgctaactca
ggatccctgcaaggccctcagaccccccagtccaccggcagcaactcgatggccgaggtt
ccgggtgacctgaagccgcccacccccgcctccacccctcacggacagatgaccccgatg
tcagggggaagaagcagtacaatcagtgtgcacgacccattctcagacatcagtgaccca
tcgttccccaagcggaactccatgacccccaacaccccgtaccagcaaggcatgggcgtg
ccggacatgatgggcaggatgccctacgagcccaacaaggaccccttcggtggaatgagg
aaagtgcctggaagcagcgagcccttcatgactcaaggacagatgcccaacagcagcatg
caggacatgtacaaccaaagtccctccggcgccatgtccagcctgggcatggggcagcgg
cagcagtttccctatggagccgggtatgaccgaaggcatgagccttacgggcagcagtat
ccaggccaaggccctccgacgggacagccaccttatggaggacaccagccgggcctgtac
ccgcagcagccgaactacaagcgccacatggacggcatgtacgggcctccagccaagcgc
cacgagggggacatgtacagcatgcagtatggcggccagcagcaggagctgtacaaccag
tacgggagctcctactcgggcccagaccggaggcccatccaggggcagtacccgtacccg
tacaacagagagaggatgcagggcccgggccagatgcagccgcacggcatcccgccccag
atgatgggcggccccatgcagtcgtcctccggcgaggggccgcagcagaatatgtgggca
gcccgcaacgacatgccttacccctaccagaacaggcaaggcccgggcggccctgcacag
gcccccccttaccccggcatgaaccgcacggatgacatgatggtccccgaccagaggatc
aaccacgagagccagtggccttcccacgtcactcagcgccagccttacatgtcgccttcg
gcctctgtgcagcccatcactcgcccaccccagtcctcctacccgacgccaccgtcactg
ccaaaccacatctccagggcgcccagccccgcctccttccagcgctccctggagagccgc
atgtctcccagcaagtcccccttcctgcccaccgtgaagatgcagaaggtcatgcccgcc
gtccccacgccccaggtggccgggcccccagcccagccaccccccagccgcagggagatc
acctttcctcctggctctgtggaggcctcgcagccggtcctgaagcagaggcggaagatc
acctccaaagacatcgtgactcctgaggcgtggcgtgtcatgatgtctcttaaatcgggt
ctgttagctgaaagcacgtgggctttggacaccatcaatatccttctgtacgatgacagc
accgtggctactttcaatctctcccagttgtctggatttctggaacttttagtagagtac
ttccgaaagtgcctgattgacattttcgggattcttacggagtacgaagtgggtgacccc
agccagaaagcacttgatcacagttcaggcgacagagatgactcctcctcggcggacgat
tctggaaaagaggaagaagactccgagtgtctggaggaggaggacgacgacgacgaggag
gaggacaacgaggaggaggaggagggggaaaagacagaatcggaggccaagagcagcggc
gcccccgcccccctggacgccggcgccgacccccgggagaggcccaagcaggccagtaag
ttcgacaagctgcccatcaagattgtcaggaagaacaagctgttcgtgctggaccgctcg
gcccggctgggccgcgtgcaggagttcagcagcgggctcctgcactggcagctgggcggc
ggcgacaccacggagcacatccagacgcacttcgagagcaagctggagatcccgccgcgc
cggcgcccgccgcccggccccgcggggaggaagcccgagccggagggcggcggcgcgccc
gaggagcagcccgagaagagcatcctcgccaccatcgacgacgtgctgtccgcccggccg
ggggctctgcccgaagactccaacccggggccccaagccgacagcggcaagttccccttc
ggcatccagcaggccagaagccaccggaacatcaagctgctggaggacgagccgcggagc
cgcgacgagacgcccctgtgcaccacggcgcactggcaggactcgctggcccggcgctgc
atctgcgtctccaacatcgtgcggagcctgtccttcgtgcccggcaacgacgcggagatg
tccaaacaccccggcctggtgctgatcctggggaagctgattctcctccaccacgagcac
ccggagaggaagcgagccccgcagacctacgagaaggaggaggaggaggacaaaggggtg
gcctgcagcaaggacgagtggtggtgggactgcctggaagtcctccgggacaacacgctg
gtcacgctggccaacatctccgggcagctggacctgtctgcctacacggagagcatctgc
ctgcccatcctggacggcttgctgcactggatggtatgcccgtccgccgaggcgcaagac
cccttccccacggtggggcccaactcggtcctgtcgcctcagagactcgtgctagagacc
ctgtgcaaactcagcatccaggacaacaacgtggacctgatcctggccacccctccgttc
agccggcaggagaagttctacgctacgttagttaggtacgtgggggatcggaaaaaccca
gtgtgtcgagaaatgtccatggcgctcttgtcgaaccttgcccagggggacgcgctggca
gccagggccatcgctgtgcagaagggaagcatcgggaacttgatcagcttcctggaggac
ggggtcaccatggcgcagtaccagcagagccagcacaacctcatgcacatgcagcccccg
cccctggagcccccgagcgtggacatgatgtgccgggcggccaaggccctgctggccatg
gccagggtggacgagaaccgctccgagttcctcttgcacgagggtcggttgctggatatc
tcgatatcggcggtcctgaactctctggtggcgtcggtcatctgtgatgtactctttcag
atcgggcagttatga
DBGET
integrated database retrieval system
