Perognathus longimembris pacificus (Pacific pocket mouse): 125357493
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Entry
125357493 CDS
T08928
Symbol
Afdn
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04014
Ras signaling pathway
plop04015
Rap1 signaling pathway
plop04024
cAMP signaling pathway
plop04517
IgSF CAM signaling
plop04520
Adherens junction
plop04530
Tight junction
plop04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
125357493 (Afdn)
04015 Rap1 signaling pathway
125357493 (Afdn)
04024 cAMP signaling pathway
125357493 (Afdn)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125357493 (Afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
125357493 (Afdn)
04530 Tight junction
125357493 (Afdn)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
125357493 (Afdn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
125357493
NCBI-ProteinID:
XP_048210395
LinkDB
All DBs
Position
9:72129274..72246733
Genome browser
AA seq
1923 aa
AA seq
DB search
MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDVDEKPLVVQLNWNK
DDREGRFVLKNENDAIPAKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQ
ASDKEDRPSQGEDSENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPKDYCIAR
VMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKRRPPDYIPKKTKKHA
EGKPPKGKERADGAGYGSSLPPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFD
DNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETTMLQSGMKLQFGPS
HVFKFVDPSQDHALGKRSVEGGLMVKGPRHKPGAVQETTFDLGGDVLSGPALPTSRSTTR
LDSDRVSSASSAAERGMVKPMIRVDQQQDGRRQESRTQDATGPELVLPASIEFRESSEDS
FLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQHRPDISPTERTHKVIAVVNKMVSMM
EGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRITLDAQDVLAHLVQMAF
KYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMSLLRRCRVNAALTIQLF
SQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAEKQGLELAADCHLSRIV
QATTLLTMDKYARDDIPNISSTCFKLNSLQLQALLQNYHCAPDEPFIPTELIENVVAVAE
NTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLCQRGFCRL
IPHIRSPGTWTIYFEGADYESHIMRENTELAQPLRKEPEIITVTLKKQNGMGLSIVAAKR
ICHVCDTEGRPSKRKQELPHVCTLQDSTVQGAGQDKLGIYVKSVVKGGAADVDGRLAAGD
QLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDR
RNSGKPRPKSEGFELYNNSAHNGSPESPHLPWAEYSEPKKLPGDDRLMKNRADHRSSPNV
ANQPPSPGGKSTYTSGTAAKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPAS
KSQDRMAPPQNQWPNYEEKPHMLPDSNHSSIAIQRVTRSQEELREEKAYQLERHRIESTM
DRKSDSDMWINQSSSVESSSSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAVVPPTPVAI
SQPIRTDLPPPPPPLPVHYTSDFDGIPIDLPLPPPPASQVGPSSAQVAAAERKKREEHQK
WYEKEKARLEEERERKRREQERKLGQMRTQSLNPPPFSPMVAQPAKPEKPSTLPRPQETV
IRELQPQQQPRTIERRDLQYITISKEELSSGDSLSPDPWKRDAREKLEKQQQMHIVDMLS
REIHELQSKVDRTSEESDRLRKLMLEWQFQKRLQEAKQKDEDDEEEEEDDVDTMLIMQRL
EAERRARLQDEERRRQQQLEEMRKREAEDRSKQEEERRRQEEERVKRDAEEKRRQEEGYY
SRLEAERRRQHDEAARRLLEPEEPGLCRPPLPRDYAPPSPSPAPSAPPPPPQRNASYLKT
QVLSPDSLFTAKFVAYNEEEEVEEDCSPAGQDKYASSRKSHGRIPPATLRPQQPPCQPRP
ASDGIFLSNSFQPPSAKANSTAHRAGQPPLSPNKPAFYCPSYSKGPPSYTGSAGTVTGAH
DAPRDPREKLARSHDANLPGISGAPENLTFKERQRLFSQGQDVSDKVKASRKLTELENEL
NTK
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgggacgaggagcggcggaagctggccgacatcatccaccactgg
aacgccaaccggctggacctgttcgagatcagccagccgaccgaggatttggagttccat
ggagtgatgagattttattttcaagataaagctgctggaaactttgcaacaaaatgtatt
cgtgtctctagcactgcaaccactcaagatgtgattgaaaccctggcagaaaaattccgc
cctgatatgcgcatgctgtcctctcccaagtactccctctatgaagtccatgtcagtgga
gaagaaagaagattggacgttgatgagaagcctctagttgtgcagttgaattggaataaa
gatgatcgagagggcagatttgtccttaagaatgagaacgatgcaatccctgctaagaag
gctcaaagcaatggacctgaaaagcaggaaaaagaaggtgttatccagaacttcaagaga
actctttcgaagaaagaaaagaaggaaaagaagaagagagaaaaagaggctttgagacag
gcatctgataaagaagatagaccttctcaaggggaagacagtgagaattctcgtctggct
gctgaagtttataaagacatgcctgaaactagctttactcgaacaatttctaatcctgag
gtggtaatgaagcggcggagacaacagaaattggaaaaaagaatgcaagagtttcggagt
tctgatgggcggcctgattcaggtggaacattgagaatttacgcagacagcttaaaacca
aatattccctacaagacaatcctgctgtctactacagatcctgcagattttgctgtggct
gaagctttagagaagtatggtctggaaaaagaaaatcctaaggactactgcattgctcgg
gtgatgcttcctcctggagctcagcattctgatgaaagaggagctaaagaaattattctt
gatgatgatgaatgtcctttacaaatcttcagggaatggccaagtgacaaagggattcta
gtcttccagttgaagaggaggccgccagactatatcccaaagaaaacgaagaaacacgcc
gaagggaaaccaccaaaggggaaagagagagctgatggggctggctatggctcctctctt
ccccctgagaaactgccctacttggtagagttaagcccagatggttctgactccagagac
aagccaaagctttaccgccttcagttaagtgtgactgaagttgggacagaaaagttcgat
gacaactctatccagttatttggtccaggaattcagccccatcactgtgaccttaccaac
atggatggggtggtcacggtgactcccagaagcatggacgcagagacttatgtggatggc
cagcgcatctcggagaccaccatgctgcagagcggcatgaagctgcagttcggcccgtca
cacgtcttcaagttcgtggaccccagccaggaccatgctcttgggaagaggtctgtggag
ggaggcctaatggtcaagggccccagacataaaccaggagctgtgcaggagacaacattt
gacttgggaggtgatgttctcagtgggcctgcactgccgacaagcaggagcaccactaga
ctggacagcgacagggtgtcctctgcctccagcgcagctgaacgaggaatggtgaagcca
atgatccgcgtggatcagcagcaggatggccgcaggcaagaaagcagaactcaagatgca
actgggcctgaattggtactgcctgcaagcatcgaattcagggaaagttctgaagattcc
tttttatctgctattataaattataccaatagttctactgtccattttaagttgtctcct
acatacgtattatacatggcctgtcggtatgtattgtccagccagcacagacctgacatc
agtcctacagagcgcacgcacaaggtcattgcagtggtcaacaagatggtgagcatgatg
gaaggtgtcattcaggaagtagaccaggttgatcagaaacaaaagaatattgctggggcc
cttgccttctggatggcaaatgcatctgaactactcaacttcatcaagcaggaccgagac
cttagtcggatcactttggatgcccaggatgtcttagcacacttagttcagatggcattt
aagtacttggttcactgtcttcaatcagaacttaataactatatgccagcctttcttgat
gaccctgaagagaacagtctgcaaagacccaaaatagatgatgtgctgcacacccttaca
ggagctatgtccctgctgcggcgctgcagagtgaacgctgccctgaccatccagcttttc
tctcagctcttccacttcatcaatatgtggctgttcaacagactggtgactgacccagac
tcaggactgtgctcccactactggggagccattatccgccagcagttggggcatattgaa
gcctgggccgagaagcaggggttggagctagcagctgattgtcacctgagcagaattgtg
caggcaactactttacttactatggataagtatgcacgtgatgacattccaaacatcagt
agtacctgctttaagttaaactctctacaacttcaagccttgttacagaattatcactgt
gcccctgatgagccttttatcccaacggaacttatagaaaatgtggtagctgttgctgaa
aacacagctgatgagcttgcccgcagtgacggcagagaggtgcagctggaagaggaccct
gacctgcagttgccttttcttttgccagaagatggctattcctgtgatgtcgtgagaaac
attcccaatggtttacaagagtttttagatcctctatgccagagaggattttgcagatta
attcctcatatacgttcgccaggaacttggacgatatattttgaaggtgcagattatgaa
agtcacattatgcgtgaaaatacagaactggctcagcctctgaggaaggaaccagaaatc
atcactgtgaccctaaaaaagcagaatggaatgggcctaagcatcgttgcagcaaagcgt
atttgtcacgtctgtgatactgaaggaaggcccagcaaaagaaagcaagagctacctcac
gtgtgcaccctgcaggacagcacggtgcagggtgctggtcaggacaaactcgggatctat
gtcaagtctgtcgtgaaaggaggagctgcagatgtggatggacgtctagctgcaggagat
cagctcctcagtgtggatggacggagtttggttggactctctcaggaaagggcagcagaa
ctcatgacaagaacaagttccgtggtcacacttgaagtagcaaagcaaggtgccatttat
cacggcctggccaccctcctcaaccagccatctcctatgatgcagagaatttcagatcgt
cgtaactcaggtaaaccccgaccaaagagtgaaggctttgagctatataataattcagct
cataatggctcccccgagagtcctcacctgccttgggcagagtatagtgaaccaaagaaa
ttgcctggtgacgacagattgatgaaaaatagagctgatcaccgttccagccccaatgtg
gcaaatcaacctcccagtcctggagggaagagtacatacacctctggaacagcagctaag
ataacctccgtctccacgggaaacctctgcactgaggagcagacacctccgcctagacct
gaagcctaccccatccccactcagacatacacccgagagtattttaccttcccagcctcc
aaatcccaggatcggatggctcctcctcagaaccagtggccaaattatgaggaaaagcca
catatgctcccagacagtaatcattccagtattgccattcagcgtgttacccgttcccaa
gaagagcttcgagaagagaaagcttatcaacttgagaggcatcgaatcgaaagcaccatg
gatcgcaagtccgatagcgatatgtggatcaatcagagttcttccgtggaatccagttca
tccagccaagagcacctgaaccattcttccaagtcagttacccctgcctccacactgacc
aaaagtggccctggccgatggaaaacaccagctgtggtgccacccacaccggtggctatc
tctcagcccattcgaacagacctgcctccaccaccacctccccttcctgtccactacacc
agtgactttgatgggattccgatagacttgcccctcccaccccctcctgccagccaggtg
ggaccatcatctgcacaggtggcagctgcagagaggaagaaaagagaagaacatcagaag
tggtacgagaaagagaaggcccgcctggaggaggaacgggagaggaagcgcagggaacag
gagaggaagctggggcagatgcgtacccagtctctgaacccccctcccttctctcccatg
gtggcacagccagcaaagccagaaaagccttctacactcccaagaccccaggaaacggtt
attcgggagctgcaacctcagcagcagccccgcacaattgagcgcagagacttgcagtac
atcaccatcagtaaagaggagctgtcctccggggacagcctgtcccccgacccctggaag
cgagatgccagggagaagctggagaagcagcagcagatgcacattgtagatatgctgagc
cgggagatccatgagctccagagcaaggtggaccgcacctcggaggagagcgaccgcctg
cggaaactcatgctggagtggcagttccagaagaggctccaagaggccaagcagaaagat
gaagatgacgaggaagaggaggaggatgatgtggataccatgctgatcatgcagcgcctc
gaggctgagcgaagagccaggttgcaggatgaggagcgcaggcgtcagcagcagttggaa
gagatgcgcaaacgggaagcagaagatcgatcgaaacaagaggaagagcgtcgtcgtcag
gaggaggagcgagtaaagcgagatgctgaagaaaagaggcgacaggaagaaggttattac
agccgcctggaagctgagaggcgcagacagcacgatgaggcagcacgcaggctgctggag
cccgaggaacccgggctgtgccgacctccgcttccacgggactacgcgcccccatcccca
tcccctgcgcccagcgcccctcctcccccgcctcagcgaaacgcttcctacctcaaaacg
caggtcctctccccagactcgctgttcactgccaagtttgttgcgtacaatgaggaggag
gaggtggaggaggactgcagtccagcaggtcaggataagtacgccagctccaggaagtct
catgggagaattcctcctgccactctcaggccacagcagcccccctgccagccacgccca
gcctcggatggcatctttctctccaactcattccagccaccctcagccaaagccaacagt
actgctcacagagcaggccagcccccactctctcctaacaaaccagccttctactgtccc
agctactccaaaggaccgccctcttacacggggtctgctgggacagtgacaggagcccat
gacgctcctcgggacccaagagagaagctcgctagaagccacgatgcaaacttgcctgga
atttccggagcccccgaaaacctgacattcaaagagcgccagcgcctcttttctcaaggt
caagatgtgtctgataaagtgaaagcttctcgtaaactaacagaacttgagaatgaactg
aacacaaagtga
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