Perognathus longimembris pacificus (Pacific pocket mouse): 125358125
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Entry
125358125 CDS
T08928
Symbol
Taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125358125 (Taf1c)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
125358125 (Taf1c)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
125358125
NCBI-ProteinID:
XP_048210985
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All DBs
Position
10:2841522..2848674
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AA seq
822 aa
AA seq
DB search
MDFPSPLRPALFTTGPLGMSDGPDLSFMCSWRDALTLPEPPLPGSQRGAPCPAQDLLWEP
ALPGPVPLLPPSPDPWDPGVTARDLLFRCAYHYRRQPQAVLDVTEQLSHFLWDHGDMAFA
PLGRLMLENFKLEGSRSRSKKVTVVNVKNLLRDLSGHQPWGCPWAHLSHRQRRFSILGGP
VLSRAVSSLLGRLLREELALRWEQLLLDEAFTGGALAWLPGRTAGTGQLVYPTGGALDQL
QLQEVSLTSTGDPQVLGDPGCIQLRGPVRQVVTRTVQGEALLAVRSDYHCAVWKAGGQGR
PAPLQVLRVEKGATGVSLSPHLPGELAVCSRSGAVCLWTPHDGLQQIYKDSDTLVFRDLS
PWRWADFTAHPRVLTVGDRTGVKMIDTQAPPGCGLMLFRGGAEASCQKGERVLLVQYPGP
AAATRLPPTLHLICTQFSLYLVDERLPLVPVLKWDHGLASPPLLARLLPPPGPSCPQPLL
LGGQGGQLQLLHIAGDGASPPRLAAPPQSLPSSSDSLSAFPLLDPKSQQQLQERLQAPTI
GLSATLAPHASSAPVLCVFQLSAAGDVFHQRLCLQAAPSLSDAGAPGGPGPRRPPASAAA
PSWDSQAAAHCRRWLEALLQVPPAPPLWTAPTFSHRQLLGRLELQQGSGRTAERLRTAMA
EGRLLQRGDLGPPLPAAEPPPAPEPGPRDELTERLGEAWAGRGAAGWGRQQDQASGPRKQ
ARRSKRRTQLSSTFSQTSCMDALDDPGSPGPGQSPPGARSQPPGTPPSRASGVPSERRQP
LQDRAAGLPAQASPERATAPASKPTPSLPGSQPSRKKPRMGF
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggacttccccagccccctccgcccggccctcttcacaactggtcccctcggcatgagt
gacggccccgacttgtcgttcatgtgtagctggagagacgccctgaccctcccagagccc
ccgctgcccggctcccagcgtggggcgccgtgcccggcccaggacctgctgtgggagcca
gcgctgccgggacccgtccccctgctgccccccagtcccgatccctgggaccccggggtg
acagcacgtgacctcctcttccggtgcgcgtaccactaccggaggcagccccaggctgtg
ctggacgtcactgagcagctcagccacttcctgtgggaccatggggacatggccttcgcg
cccctggggaggctgatgctggagaacttcaagctggagggaagccggagccgctccaag
aaggtgacggtcgtcaatgtcaagaacctgctccgggacctcagcggacaccagccctgg
gggtgtccctgggctcacctcagccaccggcagcgccgcttctccatcctcgggggcccc
gtcctcagcagggcggtctcgagcctgctggggcgtctgctgcgcgaggagctggccctg
cgctgggagcagctgctgctggacgaggccttcaccgggggcgccctggcctggctgccc
ggcaggaccgcgggcaccgggcagctggtctaccccaccggaggcgccctggaccagctg
cagctccaggaggtcagcctgacatccaccggcgaccctcaggtcctgggggaccccgga
tgcatccagctccggggccccgtgcgccaggttgtcacccgcaccgtccagggagaagcg
cttctggccgtccgctctgactaccactgcgccgtgtggaaggcgggcgggcagggccgg
ccggcccctctgcaggtgctccgggtggagaagggcgccaccggggtcagcctcagcccc
cacctgccgggggagctggccgtgtgcagccgctccggagccgtgtgtctgtggacgccc
cacgacgggctgcagcagatctacaaggactccgacaccctcgtgtttcgggacctttct
ccctggcgctgggcagacttcacggcccaccctcgggtgctcaccgtgggtgaccgcacc
ggtgtgaagatgatcgacacgcaggcgcccccgggctgtgggctgatgcttttccgaggg
ggagcagaggcttcctgccagaaaggggagcgcgtgctgctcgtccagtacccgggcccg
gcggccgccacacgtctcccgcccacgctgcacctcatctgcacccagttctccctctac
ctggtggacgagcgcctccccctggtgccagtgctgaaatgggaccacggcctggcctcc
ccgcccctgctggcccgcctgctgcctcctcctggccccagctgcccccagcctctgctt
ctggggggccagggggggcagctgcagctgctgcacatcgcaggagatggggcctcccca
ccccggctggcagcacccccccagtccctgccctccagctccgactccctctctgccttt
cccctgctggatcccaagagccagcaacagctgcaagagcggctacaagctccgaccata
ggcctgtcggccaccctggccccccatgcctcctccgcgccggtcctgtgcgtcttccag
ctctcggccgcaggggacgtgttccaccagcgcctctgcctgcaggcggcccccagcctc
agcgatgcgggggctccgggtggccccgggccccgccgccctcctgccagcgcggccgcg
ccatcctgggactcgcaggccgctgcccactgccgccgatggctggaggcgctgctgcag
gttccccctgcaccccctctgtggaccgcacccaccttctcgcaccgccagctcctgggc
cgcctggaactgcagcagggctccgggaggacggcagagcggctccggacggccatggcg
gaggggcggctcctgcagcgcggggacctgggcccccccctccctgcggcagagccgccc
cccgcccccgagccgggccctcgggacgagctcactgagcggctgggggaagcctgggcc
ggccggggcgccgccgggtgggggagacagcaggaccaggcctcggggcccaggaagcag
gccaggcgctccaagcgccggactcagctgtccagcaccttctcgcagaccagttgcatg
gacgccctagacgaccccggcagccctggccccggccagagccccccaggggccaggtcc
cagcccccaggaacaccgccctcccgggcgtccggagtcccctcagagcggcggcagccc
ctccaggaccgcgcggccgggctgccggctcaggccagccccgagcgggccaccgcgccc
gcctccaagcccacacccagcctccccggctcccagccctcccggaagaagccgcgcatg
ggcttctga
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