Perognathus longimembris pacificus (Pacific pocket mouse): 125358213
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Entry
125358213 CDS
T08928
Symbol
Dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125358213 (Dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125358213 (Dhx38)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125358213 (Dhx38)
Spliceosome [BR:
plop03041
]
Complex C
Other components
Step II factors
125358213 (Dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
125358213
NCBI-ProteinID:
XP_048211130
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All DBs
Position
10:9661570..9678640
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AA seq
1256 aa
AA seq
DB search
MLEASCSSAVHLFHKLVGTSGIRGIPDPVMADSSEDASIHRLEGTDLDCQVGGLICKTKS
AASEQHVFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSRISSYKDWEESKDEQKE
AEEEGDEQAGRSSRKDRHYRSARVETPSHPGGVSEEFWERSRQRERERREHGVYASSKEE
KDRKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRPKDAATPS
RSTWEEEDSGSGSSRRSQWESPSPTPSYRDSERSHRPSTRDRDRSVRSKYSDDTPLPTPS
YKYNEWADDRRHLGSTPRLSRGRGRREDGEEGISFDTEEERQQWEDDQRQADRDWYMMDE
GYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRL
EVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTV
RKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEPDKALSEDGKVDYRTEQKFADHMKK
KSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHE
DGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDG
ILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEK
FAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQE
DIEVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETS
LTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQ
SAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILG
ALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGRE
EESDQIREKFAVPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDI
MVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMG
YTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASA
MEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggcttcctgctcctcagcagttcatttgtttcacaaacttgttgggacaagc
ggaattagaggaatcccagatcctgtgatggcggacagcagcgaggatgcctctatccac
cggttagaaggcaccgacctggactgccaggttggcggtctcatttgcaagaccaaaagt
gccgccagtgagcagcatgtcttcaaagctcctgctccccgcccttccttgctgggactg
gacttgctggcttctttgaaacggagggagagagaggaaaaagacgatggggaagacaag
aagaagtccagaatctcgtcgtacaaggactgggaggagagcaaggatgaacagaaggaa
gctgaggaggaaggtgatgagcaggctggccgaagtagccggaaagataggcattaccga
tctgcccgggtagagactccatcccatcctgggggtgtcagtgaagaattttgggaacga
agtcggcagagagagcgggagcgtcgggaacatggtgtctatgcttcatctaaagaagaa
aaagatcggaagaaagagaaatcacgcgacagagactacgaccgcaagagagacagagat
gagcgggataggagtcggcacagcagcagatcggaacgtgatggcggctcagaacgcagc
agcagaagaaatgaacctgagagcccgcgacaccggcccaaagatgcagccaccccatcc
aggtccacttgggaggaggaggacagcggctctggctcctcccggcgctctcagtgggag
tcaccctccccaactccttcctaccgggactctgagcggagccatcggccgtccacacga
gatcgagacagatctgtgaggagcaagtactcggatgacacgcctctgcccaccccttcc
tacaagtacaacgagtgggctgatgacagaagacacctggggtctaccccgcgcctgtcc
cggggccgaggaagacgagaggatggtgaagaagggatttcatttgacacagaggaggag
cggcagcagtgggaggatgaccagaggcaagctgaccgagactggtacatgatggacgag
ggctacgatgagttccacaaccccttggcatactcctcggaggactatgtgaggcggcgg
gagcagcatctgcataagcagaagcagaagcgcatttcagcccagcgtaggcagatcaac
gaggataacgagcgctgggagacgaaccgcatgctcaccagtggcgtggtccatcggctg
gaggtggatgaggattttgaggaggataacgcggccaaggtgcatctgatggtgcacaac
ctggtgcctcctttcctggacgggcggattgtcttcaccaagcagccagagcctgtgatt
ccagtcaaggacgccacctcggacctggctattattgcacgaaaaggaagccagacggtg
cgaaagcacagggagcaaaaggagcgcaaaaaggcgcagcacaaacactgggaactggct
gggaccaaactgggggatataatgggcgtcaagaaagaagaagagccagataaagctctg
tcagaagatgggaaagtggactacaggacagagcagaagtttgccgatcacatgaagaaa
aagagcgaagccagcagtgagtttgcaaagaagaagtcaatcctggagcagaggcaatac
ctgcccatctttgccgtgcagcaagagctcctcactatcattagagacaatagcattgtg
atcgtggttggggagacggggagtggcaagaccacccagctgacccagtacctgcatgaa
gatggctacacagactacgggatgatcggctgcacccagccccggcgggtggctgccatg
tcagtggccaagagagtcagtgaagagatggggggaaacctcggcgaggaggtgggttat
gccatccgttttgaagactgcacttccgaaaacaccttgatcaaatacatgactgacggg
atcctgctccgggagtcgctccgcgaggccgacctcgatcactacagtgccatcattatg
gacgaggcccacgagcgctccctcaacacggacgtgctcttcgggctgctccgggaggtg
gtggctcggcgctcagacctgaagctcattgtcacatcagccaccatggacgcagagaag
tttgctgccttctttggcaacgtccccatcttccacatccctggtcgtaccttccctgtt
gacattctcttcagcaagaccccgcaggaggattacgtggaggccgcagtgaagcagtcc
ttgcaagtgcacctgtcgggggcccccggggacatccttatcttcatgcctggccaggag
gacattgaggtgacgtcagaccagattgtggagcacctggaggagctggagaacgcccct
gccttggcggtgctgcccatctactcccagctgccttccgacctgcaggccaagatcttc
cagaaggctccagacggtgtgcggaagtgtatcgttgccacaaacatcgctgagacctcg
ctcaccgtcgacggcatcatgttcgttattgattctggttattgcaaattaaaggtcttc
aatcccaggattggcatggatgcactgcagatctaccccatcagccaggccaatgccaac
cagaggtcggggcgagctggcaggacgggcccaggtcagtgtttcaggctgtacacacag
agcgcttataaaaacgagctcctgaccaccacggtgcctgagatccagaggaccaacctg
gccaacgtcgtgctgctactcaagtctcttggggtgcaggacctgctgcagttccacttc
atggacccgcccccggaggacaacatgctcaactccatgtatcagctgtggatcctcggg
gccctggacaacacaggcggcctcacctccaccggccggctgatggtggagtttccgctg
gaccccgctctgtccaagatgctcatcgtgtcctgtgacatgggctgcagctccgagatc
ctgctcatcgtctccatgctctccgtccccgccatcttctacaggcctaagggccgagag
gaggagagcgatcaaatacgggagaagtttgctgtccccgagagcgatcacttgacctac
ctgaacgtctacctgcagtggaagaataataattactctaccatctggtgcaacgaccat
ttcatccatgccaaggccatgcggaaggtccgggaggtccgggcccagctcaaagacatc
atggtgcagcagcggatgagcctggcctcgtgtggcactgactgggacatcgtcaggaag
tgtatctgtgccgcctatttccaccaggcagccaagctcaagggaatcggggagtatgtg
aacatccgcacggggatgccctgccacttgcaccccaccagctccctctttggaatgggt
tacaccccggactacatagtgtaccacgagttggtcatgaccaccaaggagtacatgcag
tgcgtgaccgcggtggacggagagtggctggcagagctgggccccatgttctacagcgtg
aagcaggcaggcaaatcacggcaggagaatcgccgtcgagccaaggaggaagcgtccgcc
atggaggaggagatggccctggctgaggagcagctgcgagcccggcggcaggagcaggag
aagcgcagccccctgggcagcgtccgctccacgaagatttacactccaggtcggaaggag
cagggagagcccatgacgccccgccgcacgccagcccgcttcgggctatga
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